Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00473 | ATGCAGCCCTGTAGCAGAGAAATGCAAAGCCTCAACTCTCTTTTAAACAACTCTCAAATCTCCCTTCAGGATCTCCACGGCGACGAACACCATCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTAGCCGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTCCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCCAAGGCTGTCGTCATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGATATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAATATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGGATTTCTCCATCTCAGCCGAAACAGAAAGTCAGAGCTCGCAGGGGCCAAGCCACTGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCCGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGATGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCATCAAACGACAGTGTGACAGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCAATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCATCCAGTGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA | 1185 | 54.68 | MQPCSREMQSLNSLLNNSQISLQDLHGDEHHLNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAVVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2294679 | 2297632 | - | CmaCh11G004730.1 | Cma11g00473 | 302982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 283 | 305 | - | - | |
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 277 | 305 | - | - | |
Cma11g00473 | 394 | SMART | finulus | 204 | 253 | IPR011598 | GO:0046983 | |
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 155 | 193 | - | - | |
Cma11g00473 | 394 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 46 | 353 | - | - | |
Cma11g00473 | 394 | Gene3D | - | 193 | 255 | IPR036638 | GO:0046983 | |
Cma11g00473 | 394 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 198 | 247 | IPR011598 | GO:0046983 | |
Cma11g00473 | 394 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 196 | 258 | IPR036638 | GO:0046983 | |
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 365 | 394 | - | - | |
Cma11g00473 | 394 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 46 | 353 | - | - | |
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 155 | 201 | - | - | |
Cma11g00473 | 394 | Pfam | Helix-loop-helix DNA-binding domain | 203 | 248 | IPR011598 | GO:0046983 | |
Cma11g00473 | 394 | MobiDBLite | consensus disorder prediction | 350 | 394 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00473 | Cma12g01153 | CCT | |
Cma05g01236 | Cma11g00473 | CCT | |
Cma10g00480 | Cma11g00473 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01236 | Cma-Chr5:9494722 | Cma11g00473 | Cma-Chr11:2294679 | 1.93E-95 | dispersed | |
Cma11g00473 | Cma-Chr11:2294679 | Cma12g01153 | Cma-Chr12:9092596 | 3.91E-92 | dispersed | |
Cma10g00480 | Cma-Chr10:2188836 | Cma11g00473 | Cma-Chr11:2294679 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35814 | PF00010 | HLH | 1.40E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00473 | - | - | csv:101211609 | 642.499 |