Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00473 ATGCAGCCCTGTAGCAGAGAAATGCAAAGCCTCAACTCTCTTTTAAACAACTCTCAAATCTCCCTTCAGGATCTCCACGGCGACGAACACCATCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTAGCCGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTCCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCCAAGGCTGTCGTCATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGATATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAATATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGGATTTCTCCATCTCAGCCGAAACAGAAAGTCAGAGCTCGCAGGGGCCAAGCCACTGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCCGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGATGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCATCAAACGACAGTGTGACAGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCAATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCATCCAGTGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA 1185 54.68 MQPCSREMQSLNSLLNNSQISLQDLHGDEHHLNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAVVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2294679 2297632 - CmaCh11G004730.1 Cma11g00473 302982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00473 394 MobiDBLite consensus disorder prediction 283 305 - -
Cma11g00473 394 MobiDBLite consensus disorder prediction 277 305 - -
Cma11g00473 394 SMART finulus 204 253 IPR011598 GO:0046983
Cma11g00473 394 MobiDBLite consensus disorder prediction 155 193 - -
Cma11g00473 394 PANTHER TRANSCRIPTION FACTOR BHLH69 46 353 - -
Cma11g00473 394 Gene3D - 193 255 IPR036638 GO:0046983
Cma11g00473 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Cma11g00473 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 258 IPR036638 GO:0046983
Cma11g00473 394 MobiDBLite consensus disorder prediction 365 394 - -
Cma11g00473 394 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 353 - -
Cma11g00473 394 MobiDBLite consensus disorder prediction 155 201 - -
Cma11g00473 394 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Cma11g00473 394 MobiDBLite consensus disorder prediction 350 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00473 Cma12g01153 CCT
Cma05g01236 Cma11g00473 CCT
Cma10g00480 Cma11g00473 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01236 Cma-Chr5:9494722 Cma11g00473 Cma-Chr11:2294679 1.93E-95 dispersed
Cma11g00473 Cma-Chr11:2294679 Cma12g01153 Cma-Chr12:9092596 3.91E-92 dispersed
Cma10g00480 Cma-Chr10:2188836 Cma11g00473 Cma-Chr11:2294679 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35814 PF00010 HLH 1.40E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00473 - - csv:101211609 642.499