Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00478 ATGACTGTGGAGGCTCATTCCGTTACTTCTGTCGGTGATGATGCTGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTGCTTGAAACTCTCCTCCGTAGATGCCAATACCATGTTACCACGACGAAGCAGTCCATTGAGGCTTTGAAAATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCACACGGGGCATGTGATTATCTGTTGAAGCCGGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGGAAGAAGCTCGAACCGAAGGCAAAGAACAAGTTCCCTAGTGAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAGTGCGAAATTCAATAGGAAGCGGAAGGACCAAGACGACGATGACGATGAAGATGGAAAGGATAATGGGCTTGATAATGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAAGAAATTCGTCTCAGCGGTTAATCAGTTGGGTCTCGAAAAGGCAGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAACAAATACAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGACGGTGCGTTCATGGGGATGGGTTCGCTCGATGGATATGGAGATTTACATGGCTTTGCAGGAATGGGACGGCTTCAAAACTCTTCATTATCATCTTACTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCGGCGGGAATGAGTCTGCGTGGAATCACTTCTTCAGGACTGATACAGCAAAACTCCAAAAATTTGAACTCCGCCATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTCCTAACCAACCTACTAATCTGTTGCAAGGAATTCCGACGTCACTCGAGCTCAGCCAGCTGCAACACAGCAAGTCCACCATTCCTATTGGAGACTTCAATATAATAAATGAGACGTCTGGATTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAACTCAACCAATTTGGTTTCCACTGCCCCGTTGATGTTACAAGGAACCATGCCAACATATGGAAACCAGACTTCTCTTAGAGTGGATCCGCTGAATGGAGAAACTTTTGACGTAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAACCTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCCACTTCTTTGAATCAAAATCAAGCCTATCCTAATGATCAATTCAATGCAATAAACTCGAGCATTTCTTCGACCCCCTCAACGTTTGGGAATGTCTCGGTCGATTTTTCCTCAAGAAGTGCAGTTGCAGCTCCCTTGCAGGATTCAAGAGATATGCAGTGTCAGGCAGGGGTAGTTGGCAGTGTTATTCAAACTATAAATACCATGCCGAAGCAGAGTTGGGAAGAGCTTAAACACGATTACAGTCGAAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGATCTCCGGAAATGAGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATCTAGTATATGATAGAAAGGTGAGTTCATCTTTGATGGTCCCATCAAATGCTGCTCCACTGTCCTTCGCTCAACATAACATGGTCGAAAAATTGGGTCCTAACACGAAGACGAATGTGGATGGCAACTATCTGTTGAACCAAACAAAGTCACACGATGCGTCAACTCAGGGCAGTTCTGAGTCCTTGGATTATATAATGAATGCGATGATCAAACGGTTTTTCGTCGGTTCGGTTTCTGGCTACAAGGTTGTTCCATCTCTGTCTGTTCGTCCATTTACTGATGCAAAACATCTCGTTTCAAGGTTTGAAACAATGGCAAAGAAAGAGATGGAAGTGGTGAAAGGATTAGATCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCGAGAAATCAGCCAAAGAATGGTGTGAACACGAGGGCTAATTATGCACTCAAGGAAGATGGAACTGTGAATGTGGTGAATGAAACTTGGAGTGATGGAAAGAGAAGTTCTATAGAAGGTGTGGCTTATAAGGCTGACCCTTCCAGCGAGGAGGCCAAGTTCAAGGTCAAATTCTATTTGCCTCCTTTTCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTATATTGATGGTGATTATCAGTATGTCCTGGTCGGAGAGCCTTCGAGGAAGAATCTTTGGATATTGTGCAGAAACACTCATCTTAACGAGGAGATATATAATCAGCTGCTTGATAAAGCCAAGGAAGAGGGTTATGATGTAAGCAAACTGCACAAGACATCACAGAGCGATCCTCCACCAGAAGATGAAGGCCCCAAAGATACCAAAGGCATATGGTGGATCAAATCCCTTCTGGGAAAATAA 2655 44.07 MTVEAHSVTSVGDDAATDRFPVGMRVLAVDDDPICLKVLETLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSEDKARNGGSEGEQGFSSTSNADSAKFNRKRKDQDDDDDEDGKDNGLDNDDPSNQKKPRVVWSVELHKKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENKYRLYLKRISNVASQQANMVATFGSKDGAFMGMGSLDGYGDLHGFAGMGRLQNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSKNLNSAISNLGKLQPTTMLPPNQPTNLLQGIPTSLELSQLQHSKSTIPIGDFNIINETSGFGVPNSFPDSRVNIGNSTNLVSTAPLMLQGTMPTYGNQTSLRVDPLNGETFDVDIGGSNFLDPDPSNGTWQGAAQLSRFSATSLNQNQAYPNDQFNAINSSISSTPSTFGNVSVDFSSRSAVAAPLQDSRDMQCQAGVVGSVIQTINTMPKQSWEELKHDYSRNVQHNLGAINSLISGNETLNPLSQSFNQNNLVYDRKVSSSLMVPSNAAPLSFAQHNMVEKLGPNTKTNVDGNYLLNQTKSHDASTQGSSESLDYIMNAMIKRFFVGSVSGYKVVPSLSVRPFTDAKHLVSRFETMAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRANYALKEDGTVNVVNETWSDGKRSSIEGVAYKADPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLYIDGDYQYVLVGEPSRKNLWILCRNTHLNEEIYNQLLDKAKEEGYDVSKLHKTSQSDPPPEDEGPKDTKGIWWIKSLLGK 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2318504 2324392 - CmaCh11G004780.1 Cma11g00478 302987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00478 884 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 672 IPR045279 GO:0009736
Cma11g00478 884 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cma11g00478 884 MobiDBLite consensus disorder prediction 149 163 - -
Cma11g00478 884 MobiDBLite consensus disorder prediction 851 874 - -
Cma11g00478 884 SUPERFAMILY Lipocalins 704 865 IPR012674 -
Cma11g00478 884 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cma11g00478 884 Gene3D - 24 186 - -
Cma11g00478 884 MobiDBLite consensus disorder prediction 147 210 - -
Cma11g00478 884 Gene3D - 207 264 - -
Cma11g00478 884 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 254 IPR006447 GO:0003677
Cma11g00478 884 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 672 - -
Cma11g00478 884 SUPERFAMILY Homeodomain-like 209 262 IPR009057 -
Cma11g00478 884 MobiDBLite consensus disorder prediction 851 873 - -
Cma11g00478 884 CDD REC_typeB_ARR-like 26 140 - -
Cma11g00478 884 SMART REC_2 24 136 IPR001789 GO:0000160
Cma11g00478 884 ProSitePatterns Lipocalin signature. 711 724 IPR022272 -
Cma11g00478 884 Gene3D - 685 861 IPR012674 -
Cma11g00478 884 CDD lipocalin_Blc-like 709 857 - -
Cma11g00478 884 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cma11g00478 884 Pfam Lipocalin-like domain 712 859 IPR000566 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00482 Cma11g00478 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00483 Cma-Chr10:2210896 Cma11g00478 Cma-Chr11:2318504 0 dispersed
Cma11g00478 Cma-Chr11:2318504 Cma14g01602 Cma-Chr14:12043159 4.30E-90 dispersed
Cma12g01175 Cma-Chr12:9248727 Cma11g00478 Cma-Chr11:2318504 2.39E-37 dispersed
Cma01g01650 Cma-Chr1:11291445 Cma11g00478 Cma-Chr11:2318504 7.38E-135 wgd
Cma10g00482 Cma-Chr10:2210076 Cma11g00478 Cma-Chr11:2318504 2.65E-120 wgd
Cma11g00478 Cma-Chr11:2318504 Cma12g01172 Cma-Chr12:9241331 1.63E-51 wgd
Cma11g00478 Cma-Chr11:2318504 Cma05g01254 Cma-Chr5:9619614 7.08E-98 wgd
Cma11g00478 Cma-Chr11:2318504 Cma09g00420 Cma-Chr9:1816748 8.22E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35815 PF08212 Lipocalin_2 2.20E-48 CL0116 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00478 K14491 - csv:101213687 1119.76