Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00484 ATGGGGGATATATCATTGGAAGATGTTAAGAACGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGATCAGTTGAAATGTACGAAGGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGACTCCAAATTTTTGGGCCTAACAAGCTTGAAGAGAAGCAAGAGAGCAAGTTTTTGAAGTTCTTGGGATTCATGTGGAATCCTCTGTCATGGGTCATGGAATGTGCGGCAATCATGGCCATCGTCCTGGCCAATGGAGGAGGGAGACCACCAGATTGGCAAGACTTTGTTGGTATCGTTGTCTTGTTGATCATTAATTCTACCATCAGCTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCTAAAACTAAGGTTCTAAGAGATGGGAAGTGGAAAGAAGAGGAGGCAGCGATTCTGGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCCGACGCACGTCTCCTCGAAGGCGACCCTTTAAAGATTGATCAGTCTGCTCTTACTGGTGAATCTTTGCCTGTCACCAAGTATCCTGGGGATGAAGTGTTCTCTGGGTCAACTTGTAAGCAAGGTGAGATTGAAGCTGTTGTCATTGCCACTGGTGTGCATACCTTCTTTGGAAAGGCAGCTCATCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGAAACTTCTGTATATGCTCGATAGCGGTGGGAATGGTCATCGAGATCTTAGTAATGTTTCCAATCCAGAAGAGGCCATACAGAGAAGGAATCGACAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCTATGCCAACCGTTCTGTCGGTAACCATGGCCATCGGATCGCATCGGCTTTCTCAGCAAGGTGCCATTACGAAGAGAATGACAGCAATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACCGGAACTCTCACCCTCAACAAGCTCACGGTGGACAAGTCCCTGATTGAGGTGTTTGTACCAGGCATGAACGAGGATGGTGTTATGTTGTATGCTGCAAGAGCTTCCAGAGTTGAAAATCAAGATGCCATTGATGCCTGCATTGTTGGAATGTTGGCTGACCCCAAAGAGGCAAGGGCAGGAATAACTGAGATACATTTCTTGCCTTTCAATCCGGTCGATAAGCGTACTGCTATTACCTACATTGACAAAGACGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAGAGGAGAAATAAGAGAGAAAGCTCATGCCGTTATCGATAACTATGCTAATCGTGGTCTACGTTCCTTGGCAGTTGGTCGACAGACTGTTCAAGATAAGGACAAAGAGAGTGCTGGAGAACCTTGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATCCGTCGAGCTCTCGAACTTGGTGTTAATGTTAAGATGATCACCGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGTATGGGCACCAACATGTATCCATCATCGTCTTTGCTCGGCCAATCCAAGGATGAGTCTATTGCTTCCATTCCTGTGGATGAACTAATTGAGAAGGCTGATGGGTTTGCTGGTGTCTTCCCTGAACATAAGTATGAAATCGTTAAGAAACTTCAGGAGAGGAATCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAGAGCCGACATTGGCATTGCTGTGGCCGACGCAACCGATGCAGCAAGAAGTGCATCAGACATTGTCTTGACAGAGCCAGGGCTAAGTGTGATTGTGAGTGCTGTACTAACCAGCAGAGCCATCTTTCAGAGAATGAAGAACTACACCATCTATGCAGTTTCCATTACAATCCGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATTTGGAAGTTTGATTTCTCGCCTTTTATGGTCTTGATCATTGCCATCCTTAACGATGGAACCATCATGACCATTTCAAAGGACAGGGTCAAGCCATCACCTGTGCCAGACTCATGGAAACTCAAAGAAATCTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCATCATGAGCGTCGTTTTCTTCTGGCTCGCCATTGAAACCAACTTCTTCCCGCAGAACACATTTGGCGTGAAGCCCCTCAAAGGTATTGCTGAGATCAACTCTGCTCTCTATCTTCAAGTGAGCATCATCAGTCAAGCCCTCATCTTTGTCACAAGGTCAAGAAGCTGGTCCTTTGTTGAATGCCCTGGTTACTTGCTAATTATTGCCTTCATTGCCGCACAGTTGGTTGCCACTCTAATTGCGGTATATGCTGAATGGGACTTTGCAAGGATTAAAGGCATTGGTTGGGGATGGGCAGGAGCCATCTGGGTATACAGTATTGTTACTTACTTCCCTCTTGATATTCTCAAATTCACAATTCGATACGCCCTCAGCGGCAAGGCCTGGGACAACATGCTCGACAATAAGACAGCCTTTACAACCAAGAAGGATTACGGAATAGGCGAAAGAGAAGCACAATGGGCAACAGAACAACGGACGATGCACGGCCTGCAGCCACCAGAAACCATATTTCATGAGAGTAGCAGCCACGAGGATCATTCAGAGATTGCTGAGCAAGCCAAGAAAAGAGCTGAAATTGCAAGGCTGAGGGAACTGCACACTCTAAAGGGCCATGTGGAATCAGTGGTGAAGTTGAAGGGGTTGGACATTGAGACTATCCAACAACACTACACTGTTTAA 2850 46.21 MGDISLEDVKNENVDLERIPVEEVFDQLKCTKEGLSTAEGEKRLQIFGPNKLEEKQESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGRPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKYPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFPIQKRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPGMNEDGVMLYAARASRVENQDAIDACIVGMLADPKEARAGITEIHFLPFNPVDKRTAITYIDKDGNWHRSSKGAPEQIIDLCELRGEIREKAHAVIDNYANRGLRSLAVGRQTVQDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMAIMSVVFFWLAIETNFFPQNTFGVKPLKGIAEINSALYLQVSIISQALIFVTRSRSWSFVECPGYLLIIAFIAAQLVATLIAVYAEWDFARIKGIGWGWAGAIWVYSIVTYFPLDILKFTIRYALSGKAWDNMLDNKTAFTTKKDYGIGEREAQWATEQRTMHGLQPPETIFHESSSHEDHSEIAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2340888 2345039 + CmaCh11G004840.1 Cma11g00484 302993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00484 949 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Cma11g00484 949 SFLD p-type atpase 311 640 IPR044492 -
Cma11g00484 949 Gene3D - 898 949 - -
Cma11g00484 949 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma11g00484 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cma11g00484 949 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cma11g00484 949 SUPERFAMILY HAD-like 325 635 IPR036412 -
Cma11g00484 949 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cma11g00484 949 Pfam E1-E2 ATPase 131 308 - -
Cma11g00484 949 PANTHER PLASMA MEMBRANE ATPASE 1 929 - -
Cma11g00484 949 Gene3D - 326 625 IPR023214 -
Cma11g00484 949 Gene3D - 132 216 - -
Cma11g00484 949 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Cma11g00484 949 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cma11g00484 949 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00484 949 PANTHER CALCIUM-TRANSPORTING ATPASE 1 929 - -
Cma11g00484 949 Gene3D - 94 815 - -
Cma11g00484 949 SFLD Haloacid Dehalogenase 311 640 - -
Cma11g00484 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Cma11g00484 949 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Cma11g00484 949 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma11g00484 949 Gene3D - 341 488 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00485 Cma-Chr10:2222497 Cma11g00484 Cma-Chr11:2340888 0 dispersed
Cma11g00484 Cma-Chr11:2340888 Cma14g01362 Cma-Chr14:10579983 0 dispersed
Cma01g00171 Cma-Chr1:759278 Cma11g00484 Cma-Chr11:2340888 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00484 K01535 - csv:101214655 1734.15