Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00529 ATGGAGAAAAGGTATGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCCAGAGATTCTCCCAACACTATTCCTCGAACTAGCCTAGTTTATGATTCTGCTACCGAAACACGGTATTTAAATGCTAGCAACAGAGATCTCTGTACCCTAAATGAAACTGAGCTAGCCTCTGATAATGCCAATTCAACACGATCAGATAACAAAACAACAAGCAAACTTCTTCAGTTCTCTTTTCATGAGCTCAAGGCTGCCACTGGAAACTTTAGACCTGACAGTATTCTTGGGGAAGGTGGATTTGGTTTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGGATTACAGTAGCTGTTAAGAGCATGAAACAAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCTTTTCTTGGACAACTTCACCACCCGAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACATTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAAAACCATATTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATTAAGATCGCCCTTGGAGCAGCGAAAGGATTGGCCTTTCTTCATAGCGGTCCAGTACCTGTTATCTATAGAGATTTTAAGACATCCAACATCTTGCTTGATTCTGAATACAATGCAAAGCTTTCGGATTTTGGTTTTGCAAAAGCAGGACCTCAAGGGGACAAAACACATGTTTCTACTAGGGTGATTGGAACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCTAAAAACGATGTTTATAGCTTTGGTGTTGTGCTTCTTGAGATTGTAACGGGGAGAAGATCCATGGACAAAAAACGTCCGAGTGGGGAACAAAATCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAGGCTATATCATATAGTGGATCCCCGTTTGGAATTCAACTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGATCCAAAACTACGTCCAACCATGGACGAAATCGTGAAGGTTCTGACTCCACTGCAAGATCTCAACGATCTCGCCATCCTAACGTCTCACTGCCGCTTATCTTCACAAGGGAGGCGCAAGAAGAAACCTGATGGCCTCACCTACTCTCAAAGCTTCAGAGCATCTCCACTGAACACTGGAAAGCAGCATATAAGGTGA 1275 43.45 MEKRYGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNETELASDNANSTRSDNKTTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSMKQDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQHLLVYEFMSRGSLENHIFRRTIPLPWSNRIKIALGAAKGLAFLHSGPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRRLYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEIVKVLTPLQDLNDLAILTSHCRLSSQGRRKKKPDGLTYSQSFRASPLNTGKQHIR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2542611 2546427 + CmaCh11G005290.1 Cma11g00529 303038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00529 424 PANTHER OS01G0588500 PROTEIN-RELATED 56 392 - -
Cma11g00529 424 Gene3D Transferase(Phosphotransferase) domain 1 181 389 - -
Cma11g00529 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Cma11g00529 424 PANTHER OS01G0588500 PROTEIN 56 392 - -
Cma11g00529 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00529 424 Gene3D Phosphorylase Kinase; domain 1 68 180 - -
Cma11g00529 424 MobiDBLite consensus disorder prediction 407 424 - -
Cma11g00529 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Cma11g00529 424 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
Cma11g00529 424 CDD STKc_IRAK 101 377 - -
Cma11g00529 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Cma11g00529 424 MobiDBLite consensus disorder prediction 394 424 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00529 Cma12g01192 CCT
Cma10g00532 Cma11g00529 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00529 Cma-Chr11:2542611 Cma18g01174 Cma-Chr18:9397046 0 dispersed
Cma10g00532 Cma-Chr10:2436574 Cma11g00529 Cma-Chr11:2542611 0 wgd
Cma11g00529 Cma-Chr11:2542611 Cma12g01192 Cma-Chr12:9352555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68886 PF07714 PK_Tyr_Ser-Thr 2.80E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00529 - - bhj:120071895 828.55