Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00536 | ATGAGCGCAGATGGCGTTTATGCTCATTCTTGCTTGAAGCTCGACGTATTGGTGAAAATTGCAAAGAAAGCTTCTCTTCTTTTCTTGTTGTTGAGAGTTGAAACCATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAATAAGATGCAAATTCGAGATTCCACTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAAGAATCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGCGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTATTAAACAAATGA | 681 | 42.29 | MSADGVYAHSCLKLDVLVKIAKKASLLFLLLRVETMSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNNKMQIRDSTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQAKIDDGSERLMSMAALLNK | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2583470 | 2590191 | + | CmaCh11G005360.1 | Cma11g00536 | 303045 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00536 | 226 | Pfam | YABBY protein | 44 | 200 | IPR006780 | GO:0007275 | |
| Cma11g00536 | 226 | PANTHER | PROTEIN YABBY 6-RELATED | 36 | 217 | IPR006780 | GO:0007275 | |
| Cma11g00536 | 226 | PANTHER | AXIAL REGULATOR YABBY 5 | 36 | 217 | - | - | |
| Cma11g00536 | 226 | SUPERFAMILY | HMG-box | 143 | 193 | IPR036910 | - | |
| Cma11g00536 | 226 | Gene3D | High mobility group box domain | 138 | 195 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01557 | Cma-Chr2:8833805 | Cma11g00536 | Cma-Chr11:2583470 | 1.43E-56 | dispersed | |
| Cma05g00022 | Cma-Chr5:105423 | Cma11g00536 | Cma-Chr11:2583470 | 3.06E-39 | dispersed | |
| Cma06g00763 | Cma-Chr6:3875334 | Cma11g00536 | Cma-Chr11:2583470 | 6.32E-49 | dispersed | |
| Cma11g00536 | Cma-Chr11:2583470 | Cma15g01149 | Cma-Chr15:7308199 | 3.51E-55 | dispersed | |
| Cma20g00139 | Cma-Chr20:671323 | Cma11g00536 | Cma-Chr11:2583470 | 1.13E-26 | dispersed | |
| Cma10g00541 | Cma-Chr10:2483897 | Cma11g00536 | Cma-Chr11:2583470 | 8.80E-110 | wgd | |
| Cma11g00536 | Cma-Chr11:2583470 | Cma12g01202 | Cma-Chr12:9427635 | 3.28E-87 | wgd | |
| Cma11g00536 | Cma-Chr11:2583470 | Cma05g01287 | Cma-Chr5:9820965 | 1.27E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35817 | PF04690 | YABBY | 5.30E-70 | CL0114 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00536 | K25796 | - | csv:101215951 | 352.829 |