Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00547 ATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCAATTTTGATGAGCGGACGTAATGCCAAAACCAATTTCCCGACAACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCGTCCATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCACGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGAAGAGTCTCTGATGGGTGTGGTTGTGGCTGATCAGTCTCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACCAAATGTTTGAGATTCAACAGGGAAAGGATGTTTATCTTTAG 615 49.11 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEEESLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNQMFEIQQGKDVYL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2624261 2625049 + CmaCh11G005470.1 Cma11g00547 303056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00547 204 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Cma11g00547 204 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cma11g00547 204 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Cma11g00547 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cma11g00547 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cma11g00547 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cma11g00547 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cma11g00547 204 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 192 - -
Cma11g00547 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cma11g00547 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01293 Cma11g00547 CCT
Cma05g01293 Cma11g00547 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00596 Cma-Chr8:3388485 Cma11g00547 Cma-Chr11:2624261 1.18E-30 dispersed
Cma11g00547 Cma-Chr11:2624261 Cma17g00889 Cma-Chr17:6760886 5.09E-31 dispersed
Cma01g01502 Cma-Chr1:10548202 Cma11g00547 Cma-Chr11:2624261 3.22E-71 wgd
Cma11g00547 Cma-Chr11:2624261 Cma05g01293 Cma-Chr5:9852901 4.50E-81 wgd
Cma11g00547 Cma-Chr11:2624261 Cma09g00461 Cma-Chr9:2028621 7.83E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35818 PF00847 AP2 1.30E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00547 - - bhj:120071615 305.834