Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00547 | ATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCAATTTTGATGAGCGGACGTAATGCCAAAACCAATTTCCCGACAACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCGTCCATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCACGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGAAGAGTCTCTGATGGGTGTGGTTGTGGCTGATCAGTCTCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACCAAATGTTTGAGATTCAACAGGGAAAGGATGTTTATCTTTAG | 615 | 49.11 | MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEEESLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNQMFEIQQGKDVYL | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2624261 | 2625049 | + | CmaCh11G005470.1 | Cma11g00547 | 303056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00547 | 204 | CDD | AP2 | 5 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677 | |
Cma11g00547 | 204 | Pfam | AP2 domain | 6 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cma11g00547 | 204 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cma11g00547 | 204 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00547 | 204 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01293 | Cma11g00547 | CCT | |
Cma05g01293 | Cma11g00547 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00596 | Cma-Chr8:3388485 | Cma11g00547 | Cma-Chr11:2624261 | 1.18E-30 | dispersed | |
Cma11g00547 | Cma-Chr11:2624261 | Cma17g00889 | Cma-Chr17:6760886 | 5.09E-31 | dispersed | |
Cma01g01502 | Cma-Chr1:10548202 | Cma11g00547 | Cma-Chr11:2624261 | 3.22E-71 | wgd | |
Cma11g00547 | Cma-Chr11:2624261 | Cma05g01293 | Cma-Chr5:9852901 | 4.50E-81 | wgd | |
Cma11g00547 | Cma-Chr11:2624261 | Cma09g00461 | Cma-Chr9:2028621 | 7.83E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35818 | PF00847 | AP2 | 1.30E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00547 | - | - | bhj:120071615 | 305.834 |