Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00552 ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAATCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA 921 43.76 MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2665204 2667809 + CmaCh11G005520.1 Cma11g00552 303061
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00552 306 Pfam RING-variant domain 51 101 IPR011016 GO:0008270
Cma11g00552 306 SMART ringv_2 50 102 IPR011016 GO:0008270
Cma11g00552 306 ProSiteProfiles Zinc finger RING-CH-type profile. 43 108 IPR011016 GO:0008270
Cma11g00552 306 SUPERFAMILY RING/U-box 49 106 - -
Cma11g00552 306 MobiDBLite consensus disorder prediction 1 43 - -
Cma11g00552 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Cma11g00552 306 CDD RING_CH-C4HC3_MARCH 51 102 - -
Cma11g00552 306 MobiDBLite consensus disorder prediction 9 31 - -
Cma11g00552 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 115 IPR013083 -
Cma11g00552 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00002 Cma-Chr1:5881 Cma11g00552 Cma-Chr11:2665204 1.90E-35 dispersed
Cma11g00552 Cma-Chr11:2665204 Cma14g01188 Cma-Chr14:9513675 7.21E-41 dispersed
Cma03g00789 Cma-Chr3:6088094 Cma11g00552 Cma-Chr11:2665204 5.81E-45 transposed
Cma10g00580 Cma-Chr10:2653003 Cma11g00552 Cma-Chr11:2665204 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00552 - - cmax:111465033 631.713