Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00552 | ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAATCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA | 921 | 43.76 | MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2665204 | 2667809 | + | CmaCh11G005520.1 | Cma11g00552 | 303061 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00552 | 306 | Pfam | RING-variant domain | 51 | 101 | IPR011016 | GO:0008270 | |
| Cma11g00552 | 306 | SMART | ringv_2 | 50 | 102 | IPR011016 | GO:0008270 | |
| Cma11g00552 | 306 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 43 | 108 | IPR011016 | GO:0008270 | |
| Cma11g00552 | 306 | SUPERFAMILY | RING/U-box | 49 | 106 | - | - | |
| Cma11g00552 | 306 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cma11g00552 | 306 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 306 | - | - | |
| Cma11g00552 | 306 | CDD | RING_CH-C4HC3_MARCH | 51 | 102 | - | - | |
| Cma11g00552 | 306 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
| Cma11g00552 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 115 | IPR013083 | - | |
| Cma11g00552 | 306 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 306 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00002 | Cma-Chr1:5881 | Cma11g00552 | Cma-Chr11:2665204 | 1.90E-35 | dispersed | |
| Cma11g00552 | Cma-Chr11:2665204 | Cma14g01188 | Cma-Chr14:9513675 | 7.21E-41 | dispersed | |
| Cma03g00789 | Cma-Chr3:6088094 | Cma11g00552 | Cma-Chr11:2665204 | 5.81E-45 | transposed | |
| Cma10g00580 | Cma-Chr10:2653003 | Cma11g00552 | Cma-Chr11:2665204 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00552 | - | - | cmax:111465033 | 631.713 |