Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00553 ATGGAGGGCCTCAGAAACAGAGGAGTTTTCAAGGTTTCTGTTTGTGGGCAACAGGAGCTCGAGCAACTCTCTAGAGATGGCAGTCAGTATAGCCTCACCACCGGAATATTGCCGTCTCTTGGAGCTAGAAGCAACCGGAGAGTTAAGCTTCGGTGGTTTATCATATCGCCCTATGACCGTCGATACAGGATTTGGGAGACATTTCTAGTTGTTTTAGTGGTTTATACAGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCAGTTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTGTTCTAACATTCTTCGTGGCTTATCTTCATAAAGCCACCTATTTACTTGTGGATGAACCGAAGAAGATAGCTCTAAAGTATGCACGTTCATGGCTAATCTTTGATGTCATATCAACAATCCCTTCCGAACTTGCTCAGAAAATTTCCCCACCACCGCTCCGTTCTTATGGATTATTCAACATGCTTCGTTTATGGCGTCTAAGAAGAGTCAGTGCTCTGTTTTCCAGATTGGAAAAAGATAAGAACTATAACTACTTCTGGGTTCGATGTGCGAAGCTCATTTGTGTTACTCTCTTTGCGGTTCATTGTGCTGCATGTTTCTATTATCTGATTGCTGCTCGTAATAGTGACCCGACTAAAACATGGATTGGAGCGTCTATTGATGACTTTCTTAATCAAAGTTTGTGGGTTAGATATGTCACTTCCATTTACTGGTCCATCACTACCTTAACCACTGTTGGGTATGGCGATTTGCATCCTGTGAATTCGAAGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGCTTGACAGCATATTTGATTGGAAATATGACCAACTTAGTTGTTCATGGCACCGGTAGAACTAGAAAATTTAGAGATACCATTCAAGCGGCTTCGAGTTTCGCTCATAGGAATCAACTTCCTCCCCGTTTGCAAGATCAAATGCTTGCACATTTGTGTCTAAAGTTCAGGACTGATTCTGAGGGATTGCAGCAGCAAGAAACTCTCGACTCCTTACCTAAAGCCATCCGATCGAGCATTTCTCATTATCTGTTCTATTCTCTAGTAGACAAAGTCTACTTGTTTCGCGGTGTTTCGAATGATCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTACTTTCCTCCAAAGGAAGATGTGATTTTACAAAACGAAGCGCCGACCGACTTTTACATTCTTGTCACGGGTGCTGTGGATTTGCTGGTTCTCAAGAATGGAGTTGAACAGCTTGTTGGAGAGGCTAGAACCGGGGATCTTTGTGGTGAGATTGGGGTGTTATGTTACAGGCCACAACTATTTACGGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGCTTTCCTTAATATTGTTCAATCTAATGTCGGTGACGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAGGGACCTCAAAGACAAGGACCCCATCATGGAAGGGGTATTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGCTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAGCTTTTGAAACGAGGTCTCGATCCAAATGAATCGGACAACAACGGGCGTACTTCACTCCACATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTGTTACTGGACTATGGAGCTGATCCCAATAGCAGAGATTCTGATGGAAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCATGAGCCAGTTATTCAGCTACTTATGGACAATGGAGCTAATCTTCGATCGGGGGACGTGGGTCAATTTGTGTGCACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTGTCCGATATGGAGGAGACGTTAGGAGTGCCAAGATCAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTTAAGTTCCTTCTTCAACAAGGAGCTGATATTGACAAAGCTGATGTTCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGGCATGAAGAGATTAAAAATCTCTTCCAGACAACCAAAGAGTCAAAAACTCAATCTGTCATTGCCATTCCCGAGAAGCAGAATGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTACGATTCGCCCCATACCTCAGGAAGGAAATGATGGTTCATTGTCGGGTCATTCACGTCCACGGCGTAGAACTAACAACTTCAATAACTCGTTGTTTGGAATCATGTCAGCAGCTCACTCTGGCGGGAAAGACATTCTTTTTCCTGATAACCAAACTGGAGGAGAGCACTCAGGAACCAACCCTGCTAGGGTGATTATCAGCTGTCCAGAGATTGGCGAAGTTGGTGGGAAGTTGGTTCTGCTTCCGGGAAGTTACAACGAGCTGCTCGAGATTGGTTCGAAGAAATATGGGATTGTGGGTGCAAAGGTATTGACCAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGAGACGGTGATCATCTTGTTTTTGTCAGCGATGGAAAAACCATATAG 2622 44.2 MEGLRNRGVFKVSVCGQQELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRWFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLHKATYLLVDEPKKIALKYARSWLIFDVISTIPSELAQKISPPPLRSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARNSDPTKTWIGASIDDFLNQSLWVRYVTSIYWSITTLTTVGYGDLHPVNSKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTGRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQLVGEARTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLRDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEPVIQLLMDNGANLRSGDVGQFVCTAAEQNNLQLLKEIVRYGGDVRSAKINGTTALHVAVCEDNIEIVKFLLQQGADIDKADVHGWTPRDLADQQGHEEIKNLFQTTKESKTQSVIAIPEKQNGIRFLGRFTSEPTIRPIPQEGNDGSLSGHSRPRRRTNNFNNSLFGIMSAAHSGGKDILFPDNQTGGEHSGTNPARVIISCPEIGEVGGKLVLLPGSYNELLEIGSKKYGIVGAKVLTKDGAAIEDIEVIRDGDHLVFVSDGKTI 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2667971 2672499 - CmaCh11G005530.1 Cma11g00553 303062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00553 873 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Cma11g00553 873 CDD CAP_ED 380 485 IPR000595 -
Cma11g00553 873 Gene3D - 63 301 - -
Cma11g00553 873 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Cma11g00553 873 ProSiteProfiles KHA domain profile. 804 873 IPR021789 -
Cma11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Cma11g00553 873 PANTHER POTASSIUM CHANNEL AKT1 6 871 IPR045319 GO:0005249|GO:0006813
Cma11g00553 873 Pfam Cyclic nucleotide-binding domain 400 485 IPR000595 -
Cma11g00553 873 PANTHER K+ TRANSPORTER 1-RELATED 6 871 - -
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00553 873 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Cma11g00553 873 Gene3D - 528 712 IPR036770 -
Cma11g00553 873 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cma11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Cma11g00553 873 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Cma11g00553 873 Gene3D Jelly Rolls 345 506 IPR014710 -
Cma11g00553 873 SUPERFAMILY Ankyrin repeat 531 710 IPR036770 -
Cma11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Cma11g00553 873 MobiDBLite consensus disorder prediction 742 763 - -
Cma11g00553 873 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Cma11g00553 873 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Cma11g00553 873 SMART ANK_2a 560 589 IPR002110 GO:0005515
Cma11g00553 873 SMART ANK_2a 593 622 IPR002110 GO:0005515
Cma11g00553 873 SMART ANK_2a 624 653 IPR002110 GO:0005515
Cma11g00553 873 SMART ANK_2a 657 686 IPR002110 GO:0005515
Cma11g00553 873 SMART ANK_2a 527 556 IPR002110 GO:0005515
Cma11g00553 873 SUPERFAMILY cAMP-binding domain-like 306 501 IPR018490 -
Cma11g00553 873 Pfam Ion transport protein 63 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma11g00553 873 Pfam Ankyrin repeats (3 copies) 532 621 IPR002110 GO:0005515
Cma11g00553 873 Pfam Ankyrin repeats (3 copies) 632 706 IPR002110 GO:0005515
Cma11g00553 873 SMART cnmp_10 380 497 IPR000595 -
Cma11g00553 873 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02308 Cma-Chr4:16068494 Cma11g00553 Cma-Chr11:2667971 1.32E-127 dispersed
Cma11g00553 Cma-Chr11:2667971 Cma13g00555 Cma-Chr13:5665470 0 dispersed
Cma14g00236 Cma-Chr14:1036657 Cma11g00553 Cma-Chr11:2667971 3.44E-12 dispersed
Cma15g00732 Cma-Chr15:3549694 Cma11g00553 Cma-Chr11:2667971 7.96E-107 dispersed
Cma10g00578 Cma-Chr10:2647001 Cma11g00553 Cma-Chr11:2667971 0 wgd
Cma11g00553 Cma-Chr11:2667971 Cma09g00474 Cma-Chr9:2084472 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00553 K21867 - csv:101220784 1593.94