Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00556 ATGAGCCACACTCCACCGCCGCCGTTCGACTCGATCAAGATCCCTTTCCTATGCGCCCTCCTCTTCATACTAGCTGTCAAGATGGCCGTGGCCTTGTGGTGGAAGCCCAGAAGGATAGAAGCACACTTTCTCCGCCAAGGAATTCGCGGCCCTCCTTATCGTTTCTTCATCGGTAACTTCAAAGAACTCGACTCTATGATGCTCGCCGCTACCTCCCGTCCGATGCCCAATTTCTCCCACAATATTCTCCCCCGCGTCCTCTCTTTTTACCATCATTGGAAGAAAATTTACGGCTCCACATTTCTGATCTGGTTCGGACCCATTGTTCGAGTGGCCGTGTCCGACCCGGACATGATCCGAGACATCTTGACTACCAACTCAGAATTCTACGAGAAAAACGAAGCTCACCCTCTCATCAAAAAGCTCGAGGGCGACGGCCTCCTTACTCTCAAGGATCAGAAATGGGCTCTCCATCGCAAGATCATCTCCCCCGTATTCAACATGGAGAATCTCAAGTTGTTGATTCCGGTGGTGGAGGAAAGTGTGGTGGATATGGTGGAGAAATGGTCGGCCATGGCAGGCGGCGCCGCCTCGGACGAGGTGGAGATTGATGTTTTTGATTGGTTCCAAACGCTAGCTGAAGATGTGGTGACCAAGACAGTGTTCGGAAGTAGCTATGAAGATGGTAAAGCCATTTTCAAGCTTCAAACTCAACAAATGATATTAGCTTCCGAAGCTTTCCAAAAGGTCTTCATTCCTGGCTACAGATTTTTGCCGACAAGAACCAATATTAATTCGTGGAAATTAGACAAGGAAATAAGAAAATCATTGATGAAATTGATCGAGAGTCGAAAAGGGAATTCAGAGAAAATTTGGGCAATGGATGAAAAAGCGCCAAAAGATTTATTAGGGCTCATGATTCAAGCTTCCAACTCATCATCTTCTTCTTCTTCATTACACACTAATATTTCCGTCCACGACATCGTTGAAGAGTGCAAAACCTTCTTCTTTGCTGGCAAACAGACCACTTCCAATCTGCTGACGTGGACTACTGTCTTGCTCGCAATGCATCCACAGTGGCAAATTCAGGCACGTGACGAGGTTCTTAGCGTGTGCGGTCCACGTGCTCTCCCCTCCAGAGATGACCTTTCTAAGTTCAAGATCCTGAGCATGATACTGAACGAGTCCTTACGATTGTACCCTCCGACGGTGGCTACGATTCGACGTGCAAAGACAGTCGTCGAGCTAAGAGGGCGGATGATCCCACGGGGGACAGAGTTCTTAATCCCAATTCTAGCGGTTCATCATGATCAAAATATTTGGGGGAATGATGCGAGCGAGTTCAATCCAGGGCGATTCTCAGAAGGCGTGGGCCACGCTGGAAACCATCCAGCCGGGTTCATTCCATTTGGACATGGTCTTCGTGCTTGCATTGGCAAGAACTTGGCTCTTCTGCAAGCAAAGTTGGCAATAGCAATCATAGTTCAACGATTCTCATTTCGATTGGCTCCTTCTTACCAGCATGCACCAGCAGTGTTGATGCTTTTGTATCCGCAATACGGAGCTCCGGTTGTTTTTCAAAAGATAGTAGAGACCCGAAGGGATTAA 1608 47.95 MSHTPPPPFDSIKIPFLCALLFILAVKMAVALWWKPRRIEAHFLRQGIRGPPYRFFIGNFKELDSMMLAATSRPMPNFSHNILPRVLSFYHHWKKIYGSTFLIWFGPIVRVAVSDPDMIRDILTTNSEFYEKNEAHPLIKKLEGDGLLTLKDQKWALHRKIISPVFNMENLKLLIPVVEESVVDMVEKWSAMAGGAASDEVEIDVFDWFQTLAEDVVTKTVFGSSYEDGKAIFKLQTQQMILASEAFQKVFIPGYRFLPTRTNINSWKLDKEIRKSLMKLIESRKGNSEKIWAMDEKAPKDLLGLMIQASNSSSSSSSLHTNISVHDIVEECKTFFFAGKQTTSNLLTWTTVLLAMHPQWQIQARDEVLSVCGPRALPSRDDLSKFKILSMILNESLRLYPPTVATIRRAKTVVELRGRMIPRGTEFLIPILAVHHDQNIWGNDASEFNPGRFSEGVGHAGNHPAGFIPFGHGLRACIGKNLALLQAKLAIAIIVQRFSFRLAPSYQHAPAVLMLLYPQYGAPVVFQKIVETRRD 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2693602 2695969 + CmaCh11G005560.1 Cma11g00556 303065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00556 535 Pfam Cytochrome P450 87 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 Gene3D Cytochrome P450 33 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 SUPERFAMILY Cytochrome P450 80 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS P450 superfamily signature 477 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 212 230 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00556 535 PANTHER CYTOCHROMEA2 16 524 - -
Cma11g00556 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Cma11g00556 535 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00556 Cma-Chr11:2693602 Cma12g01226 Cma-Chr12:9549605 0 dispersed
Cma09g00170 Cma-Chr9:722558 Cma11g00556 Cma-Chr11:2693602 1.33E-155 transposed
Cma10g00573 Cma-Chr10:2620518 Cma11g00556 Cma-Chr11:2693602 0 wgd
Cma11g00556 Cma-Chr11:2693602 Cma05g01311 Cma-Chr5:9941119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00556 K15639 - csv:101213466 853.588