Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00580 ATGCCCTACATGCATATGGAGCCAGAAGAGAAACATGTGATACCATCTTCTCAAATGGTGTTAAAATCCCTACATGGCTCAAAGGATGATGAAAAGACTAGTTTATGTAAAAGGAAAGGAAAAAGAAGGGCGAAAGGATCTACCATGAAAGGACTGAAACAAGAGGAGCTTGATCCAAATCTGGAGTTTCCCTCTTCTTCTTCCTGCAAAAGCTTAACATTTCCAAGAAGGCCAGACTTTGGCTCGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCCAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAACTGAAGAAGAACATACTGACCGAGTTGGTCAAACATTATAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTACGATGGAGGAAGCAACCTGTACACGGCCGGATTGCTGCCTTTCACATCAAAAGAGTTCACTGTCATTTTGGCTGATGAGGAAGAGGGAGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAAATAAAGTTTGTAACTTTAGCTAGCATGCACCAGTTACGAGAATTATTTGCTGGTAAACAAGTTAAAAACCCTCGAGAAGCTTTGACCATCATTGACATCGTCTTGAGGGAGCTTCATGCTCAAAGATATATATCAGTTGGGCGATTCTTTTACACTCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGTTTGGCGTGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATCTTAAACAAAGATGTGTATTCAAGACCACTGTCTGATGCTGATCGTATCAAGATTAAAAAAGTGCTCAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTGCGAAGGAAATACAGAATTTCAGGACTAACAACACAACCTACAAGAGAGCTAATCTTCCCTCTTGATGAGCAAATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGGTGTATGGATATACCATTCAGTACACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAACTATCTACCCATGGAGGCATGTAAGATTCTTAAGGGGCAGAGATACACAAAAGGACTGAATGAAAAGCAAATAGCTTCCTTGTTGAAGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGACATTTTACAGACTGTTCATCAGAATGCATATGAGGAAGATCCATATGCAAAAGAGTTCGGAATCAGCATCGACACCAAGCTTACATCGGTTGAAGCACGAGTCCTCCCATCTCCATGGCTAAAATTTCATGACACGGGAAAAGAAAGGGAACATCTGCCTCAAGTTGGTCAATGGAATATGATGAATAAGAAAGTAATAAATGGAAGTGTTGTAAGATATTGGGCTTGTATCAATTTCTCTCGCAACGTCCAAGAGAGCATAGCTTGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAGTCTCCGGCATGGAATTTAACTCAGATCCTGCAATTCCTATATACTCCGCAAGACCAGATCAAGTGAAAAAGGCCTTAAAATATGTATGTAATGCAGTTTATACCAAACATGAAGGAATGGAGTTAGAGTTACTGATAGCTATTCTTCCGGACAACAACGGCTCTTTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCGCAGTGTTGTCTAACAAAGCATGTTTTCAAGAAGAGCAGACAGTATTTGGCGAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTGTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACAATAATCTTTGGAGCTGATGTCACCCATCCAGAATCTGGAGAGAATTCTCTTCCATCGATAGCTGCCGTTGTGGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCTCACCGAGAAGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCATCGCGGCACAGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTCTATAGGGATGGTGTCAGTGAGGGTCAGTTTTACCAAGTTCTACTGCACGAACTTGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACATCATACCCGACTTTTCACATCCAATCACAGTGATAGGAGCAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCGACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCCGCTCATTATCATGTTCTTTGGGATGAGAATAATTTCAGTGCTGATGACATTCAATCTCTGACTAATAACCTCTGTTACACATATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCGGCGTATAGAGCTCGATTCTACGTGGAACCCGACGCCCAGGAGAATGCGAAAAGGTGCTGCACTCGAACCACAAATGGGTCCAGCGTCCGGCCTTTGCCTGCACTGAAAGAGAGAGTGAAAAATGTGATGTTCTATTGTTGA 2784 42.28 MPYMHMEPEEKHVIPSSQMVLKSLHGSKDDEKTSLCKRKGKRRAKGSTMKGLKQEELDPNLEFPSSSSCKSLTFPRRPDFGSLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKLKKNILTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFTSKEFTVILADEEEGAATPREREFKVQIKFVTLASMHQLRELFAGKQVKNPREALTIIDIVLRELHAQRYISVGRFFYTPCIKKPQHVGGGLQVWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKIKKVLRGVKVEVTHRGNVRRKYRISGLTTQPTRELIFPLDEQMNMKSVVEYFQEVYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQIASLLKVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDTKLTSVEARVLPSPWLKFHDTGKEREHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQESIACGFCQQLVQMCQVSGMEFNSDPAIPIYSARPDQVKKALKYVCNAVYTKHEGMELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGENSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFTSNHSDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADDIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSSVRPLPALKERVKNVMFYC 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2789527 2794806 - CmaCh11G005800.1 Cma11g00580 303089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00580 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 25 926 - -
Cma11g00580 927 Pfam PAZ domain 285 410 IPR003100 GO:0005515
Cma11g00580 927 CDD PAZ_argonaute_like 280 394 - -
Cma11g00580 927 Pfam Piwi domain 570 888 IPR003165 GO:0003676
Cma11g00580 927 ProSiteProfiles PAZ domain profile. 281 395 IPR003100 GO:0005515
Cma11g00580 927 Pfam Argonaute linker 1 domain 229 279 IPR014811 -
Cma11g00580 927 MobiDBLite consensus disorder prediction 24 53 - -
Cma11g00580 927 Pfam Mid domain of argonaute 478 555 IPR032473 -
Cma11g00580 927 Pfam Argonaute linker 2 domain 424 467 IPR032472 -
Cma11g00580 927 ProSiteProfiles Piwi domain profile. 569 890 IPR003165 GO:0003676
Cma11g00580 927 SUPERFAMILY Ribonuclease H-like 566 891 IPR012337 -
Cma11g00580 927 SMART PAZ_2_a_3 285 417 IPR003100 GO:0005515
Cma11g00580 927 PANTHER PROTEIN ARGONAUTE 10 25 926 - -
Cma11g00580 927 Pfam N-terminal domain of argonaute 86 219 IPR032474 -
Cma11g00580 927 SMART Piwi_a_2 569 890 IPR003165 GO:0003676
Cma11g00580 927 Gene3D - 638 927 IPR036397 GO:0003676
Cma11g00580 927 Gene3D - 459 632 - -
Cma11g00580 927 SMART DUF1785_2 228 280 IPR014811 -
Cma11g00580 927 CDD Piwi_ago-like 439 888 IPR045246 -
Cma11g00580 927 SUPERFAMILY PAZ domain 275 435 IPR036085 GO:0005515
Cma11g00580 927 Gene3D paz domain 274 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01680 Cma-Chr4:8461210 Cma11g00580 Cma-Chr11:2789527 0 dispersed
Cma11g00580 Cma-Chr11:2789527 Cma13g01111 Cma-Chr13:8310637 0 dispersed
Cma11g00580 Cma-Chr11:2789527 Cma14g01755 Cma-Chr14:12799089 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00580 K11593 - csv:101213206 1739.93