Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00586 ATGGCTGCAGTTTTCCGTTCTAGAAGCCGCATCCCTGTTTTCTTAATTTTACTTCACCTTCTTCTTCTTCTTCATTCAGTTCAATCGGAACCGTCCGCCGACAAGGAAGCACTTCTCGATTTCTTGAACAAAATCCCCCATGAGAATCGCCTTCAATGGAATGCGTCGGCCTCTGCTTGTACTTGGGTTGGAGTTAGCTGTGATGTCAATCAGTCGTTTGTTTTTGCTCTCCGGTTGCCGGGTGTTGGACTTGTCGGCCCCATTCCGGCGAATACTCTCGGCCGCTTGAATAGGCTTCGAGTTCTGAGTCTCCGGTCTAATAGAATCTCTGGGGAGTTGCCAGCGGATTTTTCGAATTTGACATTTCTTCGGAGTCTTTATCTTCAGGATAACGAGCTTTCCGGTGAACTACCGGCGAGTGTGACTCAGTTGACTCGGTTGAATCGTCTCGATCTCTCGTCCAACAATTTCACTGGTTCGATTCCATTTTCGATCAATAACTTGACCCATTTGAGCGGGCTTTTTCTGGAGAATAATGGGTTTACGGGTTCTTTGCCGAGTATTCCTGCGAGTAATTTAACGAGCTTCAATGTCTCGAATAACCAGCTCAATGGATCCATTCCCGAAACCCTTTCGAAATTCTCTTCTGCCTCTTTCGCTGGGAATTTAGCGCTCTGCGGAGGTCCATTGCCGTCATGCAACCCGTTTTTTCCCTCCCCTGCTCCGTCGCCGACGTCCGCCGTGAAACCCCCAGAAATTCCCGTCGAGAAGAAGTCAAAAAAGCTCTCCATCGCTGCCATTGTCGGAATAGTCGTCGGCGCTGCTTTCGTTGCGTTTCTGTTGCTGCTTTTACTCATTTTTTGCCTCCGGAAGCGCCAGAGTCGGCAGCCGGCGAAGCCATCGAGTACGGTGGTTACTGCTCGATCTGTGCCAGCGGAGGCCGGCACATCGTCTTCCAAAGACGACATCACTGGCGGGTCGGTGGAAGCGGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGGGTTTACAGTTTCGGTTTGGAGGATTTGTTGAGGGCTTCCGCGGAGGTTTTGGGAAAAGGAAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTCGTCAAGAGATTGAAAGATGTCGTAATGACGAAGCAGGAATTCGAAACGCAAATAGAAGCTTTGGGAAATGTAAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGACGAGAAATTACTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCGCTTCACTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTAACTGGGACAACCGGATGAAAATCGCGTTACACGCAGCGAGAGGACTGGCTCACTTACACGTGTCGGGAAAACTCGTCCACGGCAACGTCAAATCGTCGAACATCCTCCTCCACCCCAACTACGACGCCGCCGTTTCCGACTACGGCCTCAACCCTCTCTGTGGCGCTACTACGCCGCCGAACCGTATTGCCGGCTACCGCGCGCCGGAGGTTGTCGAAACTCGAAAGGTCACCTTCAAGTCCGATGTGTACAGTTTTGGCGTCTTGCTGTTGGAGCTTTTGACCGGAAAATCCCCAATTCAGGCGTCGTTGGGCGAAGAAGGGATTGATCTTCCCCGGTGGGTCCAATCAGTAGTCCGAGAGGAATGGACAGCGGAGGTTTTTGATGTGGAATTGATGAGGTACCACAATATTGAAGAGGAAATGGTTCAGTTGTTACAAATTGCGATGGCTTGTGTCGCCACAGTGCCGGACCAGCGGCCGTCGATGCAGGAAGTGGTTCGAATGATTGAGGACTTGAACCGTGTAGAGACCGACGACGGCTTACGACCATCATCCGATGACCCGTCAAAAGGATCGGAAGGGCACACGCCGCCGCAGGAGTCCAGAGCCACCCCTCCCGGAATCAGCGGAGCAGTGTAG 1983 51.74 MAAVFRSRSRIPVFLILLHLLLLLHSVQSEPSADKEALLDFLNKIPHENRLQWNASASACTWVGVSCDVNQSFVFALRLPGVGLVGPIPANTLGRLNRLRVLSLRSNRISGELPADFSNLTFLRSLYLQDNELSGELPASVTQLTRLNRLDLSSNNFTGSIPFSINNLTHLSGLFLENNGFTGSLPSIPASNLTSFNVSNNQLNGSIPETLSKFSSASFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPEIPVEKKSKKLSIAAIVGIVVGAAFVAFLLLLLLIFCLRKRQSRQPAKPSSTVVTARSVPAEAGTSSSKDDITGGSVEAEKNRLVFFEGGVYSFGLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKQEFETQIEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSASLHGSRGSGRTPLNWDNRMKIALHAARGLAHLHVSGKLVHGNVKSSNILLHPNYDAAVSDYGLNPLCGATTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPIQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRPSSDDPSKGSEGHTPPQESRATPPGISGAV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2810031 2813055 - CmaCh11G005860.1 Cma11g00586 303095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00586 660 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00586 660 Gene3D Phosphorylase Kinase; domain 1 321 426 - -
Cma11g00586 660 MobiDBLite consensus disorder prediction 621 637 - -
Cma11g00586 660 Gene3D Transferase(Phosphotransferase) domain 1 427 633 - -
Cma11g00586 660 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00586 660 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Cma11g00586 660 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Cma11g00586 660 MobiDBLite consensus disorder prediction 621 660 - -
Cma11g00586 660 Gene3D Ribonuclease Inhibitor 189 236 IPR032675 -
Cma11g00586 660 PANTHER OS05G0588300 PROTEIN 17 638 - -
Cma11g00586 660 SUPERFAMILY L domain-like 38 214 - -
Cma11g00586 660 CDD STKc_IRAK 358 620 - -
Cma11g00586 660 MobiDBLite consensus disorder prediction 299 325 - -
Cma11g00586 660 PANTHER OS05G0480400 PROTEIN 17 638 - -
Cma11g00586 660 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
Cma11g00586 660 MobiDBLite consensus disorder prediction 299 324 - -
Cma11g00586 660 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01321 Cma11g00586 CCT
Cma11g00586 Cma12g01230 CCT
Cma10g00590 Cma11g00586 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01090 Cma-Chr4:5610847 Cma11g00586 Cma-Chr11:2810031 6.52E-18 dispersed
Cma04g01496 Cma-Chr4:7601930 Cma11g00586 Cma-Chr11:2810031 9.95E-174 dispersed
Cma11g00586 Cma-Chr11:2810031 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma18g00081 Cma-Chr18:358045 Cma11g00586 Cma-Chr11:2810031 0 dispersed
Cma18g01004 Cma-Chr18:8432568 Cma11g00586 Cma-Chr11:2810031 8.90E-178 dispersed
Cma15g00321 Cma-Chr15:1490536 Cma11g00586 Cma-Chr11:2810031 9.86E-104 transposed
Cma10g00590 Cma-Chr10:2696267 Cma11g00586 Cma-Chr11:2810031 0 wgd
Cma11g00586 Cma-Chr11:2810031 Cma12g01230 Cma-Chr12:9622730 0 wgd
Cma11g00586 Cma-Chr11:2810031 Cma05g01321 Cma-Chr5:9993107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68887 PF00069 Pkinase 4.30E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00586 - - csv:101209965 1057.74