Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00593 ATGGGTTCGTTGAAAAGTGAACAAAATGTGAGCTTTGCTGCTCCAAGACCATTCCTGAACAGGCTGAAATCAGATCTGAAAGAGACGTTTTATCCCGATGATCCCTTCAGGCAGTTTCGTGATGATAAGCCAACGCACCAACTCAAAAAGGCCGTCCAGTATTTCATCCCCATATTGGAATGGCTTCCTAAATACAATTTTAATATGTTTAAGTATGATTTGCTCGCTGGTATTACCATTACCAGCCTCGCCATCCCCCAAGGCATCAGCTACGCTAAGCTTGGCAGCCTCCCTCCCATCATCGGCCTTTATTCGAGCTTCGTTCCACCGCTTGTGTATGCGGTGTTTGGAAGCTCGAAGCATCTGGCGGTGGGTACGGTGGCGGCATGTTCGTTGCTAATAGCGGAAATCATCGGAGAAGTGGCGTCGCCGGAAGAAGACCCCACATTGTATCTACACCTGGTTTTAACAGCCACCTTAATCACCGGCGTCATGCAGACGGCCTTAGGGATTCTACGATTGGGAATCTTGGTGGATTTCTTATCGCATTCAACGATCCTAGGGTTTATGGGAGGAACAGCTGTGATCATTTGCCTGCAACAGCTGAAAGGCATATTTGGACTCACTCATTTCACCTCTAAAACCGACGTCTATTCGGTACTCCATGCCGTTTTCTCCCTTAAAAATGAGTGGAGATGGCAAAGTGCTGTCACGGGCGTCGTCTTCCTTGTCTTCCTCCAGTTTACTAGGTACCTGAGAGATAGAAACCCGAAGCTGTTTTGGGTATCAGCGATGGCTCCGATGGTGACAGTGATAGTCGGGTGTTTGGTTGCATATCTCGTCCATGGAAGTCAGCATGGAATCTTAACTGTGGGCCGCTTGAACAAAGGAATAAACCCTCCTTCTATTCACTCCTTGAACTTTGACCCAAAATATCTATCAGCTGTGGTACAAGCTGGTGCCATCACTGGCCTTGTGGCTTTGGCTGAAGGAATAGCAATTGGTCGAAGCTTTGCAATAATGAAAAACGAACAAGTCGATGGCAACAAAGAGATGGTAGCCTTTGGTTTGATGAACATCGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGATGTAGAACACCAATGTCAAACGTAGTGATGGCGATCTTCATGGCTCTCACGCTCCTCTTTCTAGCACCTCTCTTCAGCTACACTCCTCTTGTAGCCCTTTCCGCCATTATTATGTCCGCCATGTTTGGTTTGATCAAATACGAAGAAATATATCATCTTTTCAAGGTCGACAAGTTCGATTTCTGCATTTGTATGGCTGCTTTCTTGGGCGTTGCCCTATTGAGCATGGATGTTGGCTTAATGCTTTCGGTGGGTCTTGCTTTGCTGAGAGCTCTTCTTTACATGGCTAGACCAGCAACTTGCAAGCTTGGGAAAATACCAGACACTGATTTGTACAGAGACACGGAGCAGTATCCTAATGCAATGAGAGTCCCTGGAATCATTGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCCGAGAAAGGATTTTGAGATGGGTTCGTGATGAGCATGCCGAGTTCGATTCCGTAGATGGATCCGTCCACCATGTACTGCTGGAGTTGAGTGGAGTTACATCAATCGACATGACAGGGATTGAAACACTCGTCGAAATTCGCAGATTGTTGCAAGCAAACGGAGTTAAGATGGGAGTTGTAAACCCAAGAATCGTAGTGATGGAGAAGATGATAGCATCAGAATTCACAAACACGATCGGGAAAGAAAACATCTATTTGTCAGTAGACGATGGAGTGGAAAGGTGCAGAGATTTGGCGTACAACCCACATAAAACAAATCTAAGCGATGAAAACGTGGAATTGAACGCAGTGGAGCATCGGGTATAA 1950 46.0 MGSLKSEQNVSFAAPRPFLNRLKSDLKETFYPDDPFRQFRDDKPTHQLKKAVQYFIPILEWLPKYNFNMFKYDLLAGITITSLAIPQGISYAKLGSLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIAEIIGEVASPEEDPTLYLHLVLTATLITGVMQTALGILRLGILVDFLSHSTILGFMGGTAVIICLQQLKGIFGLTHFTSKTDVYSVLHAVFSLKNEWRWQSAVTGVVFLVFLQFTRYLRDRNPKLFWVSAMAPMVTVIVGCLVAYLVHGSQHGILTVGRLNKGINPPSIHSLNFDPKYLSAVVQAGAITGLVALAEGIAIGRSFAIMKNEQVDGNKEMVAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTPMSNVVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMFGLIKYEEIYHLFKVDKFDFCICMAAFLGVALLSMDVGLMLSVGLALLRALLYMARPATCKLGKIPDTDLYRDTEQYPNAMRVPGIIVLQLGSPIYYANSNYIRERILRWVRDEHAEFDSVDGSVHHVLLELSGVTSIDMTGIETLVEIRRLLQANGVKMGVVNPRIVVMEKMIASEFTNTIGKENIYLSVDDGVERCRDLAYNPHKTNLSDENVELNAVEHRV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2835420 2840135 + CmaCh11G005930.1 Cma11g00593 303102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00593 649 PANTHER SULFATE TRANSPORTER 5 625 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma11g00593 649 PANTHER SULFATE TRANSPORTER 3.5-RELATED 5 625 IPR030316 GO:1902358
Cma11g00593 649 ProSitePatterns SLC26A transporters signature. 99 120 IPR018045 GO:0008271|GO:0008272
Cma11g00593 649 ProSiteProfiles STAS domain profile. 501 623 IPR002645 -
Cma11g00593 649 CDD STAS_SulP_like_sulfate_transporter 502 616 - -
Cma11g00593 649 TIGRFAM sulP: sulfate permease 57 618 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma11g00593 649 Pfam STAS domain 502 618 IPR002645 -
Cma11g00593 649 SUPERFAMILY SpoIIaa-like 503 624 IPR036513 -
Cma11g00593 649 Pfam Sulfate permease family 70 451 IPR011547 GO:0016021
Cma11g00593 649 Gene3D STAS domain 481 626 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00593 Cma-Chr11:2835420 Cma14g01741 Cma-Chr14:12745410 0 dispersed
Cma10g00603 Cma-Chr10:2788367 Cma11g00593 Cma-Chr11:2835420 0 wgd
Cma11g00593 Cma-Chr11:2835420 Cma17g00816 Cma-Chr17:6397306 0 wgd
Cma11g00593 Cma-Chr11:2835420 Cma08g00684 Cma-Chr8:4212615 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00593 K17471 - csv:116402148 1048.5