Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00601 ATGGAAAATCAATCCAATGGAAAATCCGACTCCCATCTCAACATACCCAAAATCAAGTTCACCAAGCTCTTCATCAATGGACAATTTGTTGACTCTGTTTCAGGAAAAACATTCGAGACGTTCGATCCAAGAACTGGTGAGGTTATCACCACGGTTGCCGCTGGTGAGAAAGAAGATGTGGATCTGGCCGTGAAAGCAGCCCGTGAAGCCTTCGATCACGGCCCTTGGCCCCGCATGTCTGGTGCCGACAGGGGACGAATAATGATGAAACTGGGGGACTTAATAGATGAACACGTGGAGGAACTCGCAGCATTGGATTCCCTGGACGGCGGAAAATTGTTTCAGATGGGGAAGATCGTCGACATACCGTCGGCTGCTCATATGCTACGGTATTACGCCGGTGCCGCGGATAAAATCCACGGGGAGGTACTGAAAATGGCAAGGCCGTTTCACGGCTACACTTTAATGGAGCCCATGGGAGTGGTGGGCCACATCATACCCTGGAACTTTCCGACCACCATGTTTTTCCTGAAAGTGAGCCCCGCCTTGGCCGCCGGCTGCACCATGCTCGTGAAACCTGCCGAGCAAACGCCGCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAATTGGCGGGTATTCCTGATGGAGTACTGAACGTTGTGACAGGATACGGATACACTGCAGGGTCAGCAATTGCGTACCACATGGACATTGACAAGGTGAGTTTCACAGGATCAACGAAGGTGGGAAGATCGATAATGCAGGCGGCAAGCGAGAGCAATCTGAAGCAAGTATCGTTGGAATTAGGTGGCAAATCGCCGCTCCTGATCTTCGATGACGCGGATGTGAATAAAGCCGTCGATATTGCAGTCCTTGGCATTTTCTATAACAAGGGAGAAACTTGCGCGGCGAGCTCCCGAGTTTTGGTTCAAGAGGGGATTTATGATGAATTTGTGAAAAAGATTATTGAAAAGGCGAAATCTTGGGTTGTAGGAGACCCTTTCGATCCAAAAGTTCAGTATGGACCCCAGGTGGATGAAAAGCAATTGAAGAAAATTCTGGAATATATCGAGCACGGTAAGAGGGAAGGAGCCACATTGGCGACAGGCGGCAAGCGTATAGGCGAGGTGGGGTATTACGTAGAGCCAACAATCTTCACAGACGTCAAGGAACACTCGCTGATCGCACAGGACGAAATCTTCGGGCCATTCCTCTGCGTCATTAAATTCAAAACGATCGAAGAGGGAATAAAGATCGCGAACAACACAAAGTTCGGGCTAGCAGCTGGAATAGTGACGAACAGTCTAGACATAATGAACACGGTTTCGAGGTCGATCAGAGCCGGAACCATCTGGGTGAACTGTTACTTTGCTTTCGACTCGAGCTGTCCATTTGGAGGGTACAAGATGAGTGGGTTCGGAAGGGACGCTGGAATGCACGCTGTTCATAAGTATCTTCAAACCAAAGCCATCGTCACTCCTTTGGTCAACACTCCTTGGCTTTGA 1506 49.8 MENQSNGKSDSHLNIPKIKFTKLFINGQFVDSVSGKTFETFDPRTGEVITTVAAGEKEDVDLAVKAAREAFDHGPWPRMSGADRGRIMMKLGDLIDEHVEELAALDSLDGGKLFQMGKIVDIPSAAHMLRYYAGAADKIHGEVLKMARPFHGYTLMEPMGVVGHIIPWNFPTTMFFLKVSPALAAGCTMLVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGYTAGSAIAYHMDIDKVSFTGSTKVGRSIMQAASESNLKQVSLELGGKSPLLIFDDADVNKAVDIAVLGIFYNKGETCAASSRVLVQEGIYDEFVKKIIEKAKSWVVGDPFDPKVQYGPQVDEKQLKKILEYIEHGKREGATLATGGKRIGEVGYYVEPTIFTDVKEHSLIAQDEIFGPFLCVIKFKTIEEGIKIANNTKFGLAAGIVTNSLDIMNTVSRSIRAGTIWVNCYFAFDSSCPFGGYKMSGFGRDAGMHAVHKYLQTKAIVTPLVNTPWL 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2875310 2877908 - CmaCh11G006010.1 Cma11g00601 303110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00601 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 501 - -
Cma11g00601 501 SUPERFAMILY ALDH-like 16 497 IPR016161 GO:0016491
Cma11g00601 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Cma11g00601 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Cma11g00601 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Cma11g00601 501 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 4 501 - -
Cma11g00601 501 Pfam Aldehyde dehydrogenase family 29 491 IPR015590 GO:0016491
Cma11g00601 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00104 Cma-Chr11:552767 Cma11g00601 Cma-Chr11:2875310 0 dispersed
Cma11g00601 Cma-Chr11:2875310 Cma12g00001 Cma-Chr12:1241 0 dispersed
Cma10g00604 Cma-Chr10:2795115 Cma11g00601 Cma-Chr11:2875310 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00601 K12355 - csv:101219029 856.284