Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00611 | ATGGGAATGGATGCTCACATTAGACCCACCACGCCACGTGTCATATTTGTCGTACAAGGATTAGGTTGCTTATCGTGTGGTCATCACAGTCCTTTCTTCTCCGATCACCTAGAACGTTACCGCCCGTTTCTTATTTTGTTTCTTCTATATAATTTTTCCAAAAAAATCTCGATACAACATTACCCGTTTCCCAGAAAAATCGGAGCCATCCTGTTTCATGAATTTGCACTTTTTCTTCAGCTCCATTTTCCATTAATGACTACACTCACGAAGCTTTACGTGTGCCCACAAAGCTTCGATGGCCCAAGTACTAGAGATGGGCACTTGATCGGAGCTCTTGGACGGGGAGTCCACCGGTTTGGCGTTGGCGTGTCGACGAGCCGTAGTGGATTAAGCTTGAGGAAGTGTAGATCCTTCAGAGGCGAGGATGGTGGGGATAATGAGAAGGAGGATCGTAAAGGGAGGAGTCGTGGAGATTCGAGGTTAAAAAAGGTGTCAACAAAGAAGGAAGCTCAGTTTTGGAAATTTTTGAGGTCTGGTTTTTTGGGTAAGGTTAATTTGCTTTTGGGGTCGGATTTTGAACGGGGGAAGCTTATGGCTAATATGGAGGCTTTGTTTTCTTCGGCTGCAGTCCAAATTGGAAGATATATCGTTACAATGATGAGCACTGGTGTTGTACTTGCTGTTGGGTTTCAATTATCCGGTGGTGACAGCCAGATGAACACACTGATTTGGTATAGTTGGCTCGGAGGGGTTATTATTGGAACCATGATTGGTGCTAACATGGTATTAGAGGAGCATTGCAGAGCTGGTCCACGCAACGTTGTTATAACTGGAAGCACAAGAGGATTGGGGAAAGCACTAGCCAGAGAGTTTCTTCTCTCCGGAGACCACGTAGTTGTGGCTTCTCGCAGCCCTGAGTCTGTTCAAGAGACTATTAGAGAGCTGGAGGAGAACTTAAAAGGTCTAATGATCAGAAGTGGTTCTTCCAATACAAGCCTGACACATGCTAAAGTTGTTGGCACAACATGCAATGTTTGCGACCCTGAAGATGTTCATAATTTGGCGAAGTTTGCTTTAAATGAACTTGGTTCCATTGACATTTGGATAAACAACGCGGGCACGAACAAAGGCTTTAGACCCTTGCTGCAGTTCACAGATGAAGATATTACTCAGATTCTCTCAACAAACCTCGTCGGTTCCCTTCTTTGTACTCGAGAAGCCATGCGTGTAATGAGAAGTCAGGCTAAAGGAGGACACATTTTTAACATGGATGGTGCCGGCTCTGGAGGTTCAAGTACTCCTTTGACGGCTGTGTATGGATCGACAAAATGTGGTCTTAGACAGCTTCAATCATCTCTTTTGAAAGAATGCAAGCGGTCCAATGTAGGAGTACATGCTGCATCACCTGGCATGGTTTTGACAGATCTCCTTCTTAGTGGTTCAACTGTGAGAAACAAACAGATGTTCAATATCATTTGCGAGCTTCCTGAAACAGTGGCTAGAACATTAGTTCCTCGAATGCGGGTCGTGAAAGGAACAGGGAAAGCCATCAACTACTTGACTCCTCCAAGAATCTTATTAGCTCTTGTCACGGCTTGGCTGCGACGAGGTCGGTGGTTTGACGAGAAGGGGAAGGCTCTTTATGCAGCGGAGGCAGACAGAATCCGAAACTGGGCCGAAAATCGCACTCGTTTCTCCTTCACTGATGCAATGGAGATGTACACAGAGAACACCTGGGTGTCTGTGTTCTCCCTTTCGGTGACCCATTTCATTGTTTTCGATTTCTGCTTCTCTTCTGAACTGAAATTTTCGGCGAAAATGTCGTCTCCTGCTCCCACCTCGCCGCCGGGGACTAACTCGACCTCACCCCCACCACCGACCGCGGATGCACCACCTCCATCACCTCCATCTCTCTCACCTCCTCCGCCTGCTTCATCGCCGCCGCCTCCGAACAGTACCACTCCATCTCCGCCTACTTCTTCTCCTTCCCCGCCGGTCGTGCCTTCGAGCTCTCCCCCGCCGCCGCCTACCAACTCGACGGCTCCACCGCAGCTTCCGAGTCCGACGCCGCCGTCCAATTCTGATACACCTGCGAATCCAGGAGGAGGTCAGGCTCCGCCGTCGGAAACGGCGCCGTCTCCCTCAACATCTTCGGGAGTTTCGGCGGGACTTGTGTCTGGGGTTGTCGTTGGAGTGGTGGTGGTGGTTGTAGCGTTGATTGCTATGTGTTTTTATCTAAGAAAGAAGAGGAGACGCGACGAGGAGGCGTACTACCGGCCACCGCCGCCGCCTGCGCCACCGGCGGCGTTTAAAGACGGCCCATACGGTCCCCAACAGCACCATTGGCAATCACATCCGCCGCCGCCAGGGGATCATATCGCGGGGACAGTACCAAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCCGTCACCCCCGATTATAAACAGTAGCGGAGGGTCTGGATCTAATTATTCAGGGTCTGAAAATTCGTTGGCTCCAGCTCCATCTTCTGTTCCCTTAGGGTTCTCACAGAGCAGTTTCACTTACGAAGAATTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTCGGACAAGGTGGGTTCGGTTATGTGCATAAAGGAGTTCTTCCAAACGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGCGGACAAGGAGAGCGTGAATTTCAAGCAGAAGTTGAAATCATCAGCCGAGTTCATCATAGGCATCTGGTTTCTTTGGTCGGATATTGCATCACTGGCTCCCAAAGATTGCTGGTTTATGAATTCGTTCCCAACAACACATTGGAGTTTCACTTGCACGGGAAAGGACGACCTACCATGGATTGGCCAACCAGGCTCAAAATCGCTTTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAACATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCCAAGTTGTCTTCTGATGTTAATACCCATGTTTCAACTCGAGTCATGGGCACTTTCGGATATCTTGCTCCTGAATACGCTTCAAGTGGGAAACTAACTGAGAAATCAGATGTGTTCTCCTATGGAGTAATGCTTCTGGAGTTGATTACTGGACGCAGACCTGTTGATCCAACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGGGCAACAGAAAATGGAAACTACGACGGTTTGGTAGATCCAAAGCTGCGAGATAACCACGACCACAACGAGATGGCGCGCATGGTTGCTTGCGCCGCGGCCTGTGTGCGTCATTCGGCGAGGCGTCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGAGAAGCCTCGCTTTCTGATCTGAACGAAGGAATCCGACCTGGACATAGCACTGTGTACAGTTCTTATGGAAGCTCCGACTACGACACGGCTCAGTACAACGAGGATCTGAAGAAGTTCAGGAAGATGGCGTTGGCGAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCGACGAGCGACTTTTAA | 3591 | 49.4 | MGMDAHIRPTTPRVIFVVQGLGCLSCGHHSPFFSDHLERYRPFLILFLLYNFSKKISIQHYPFPRKIGAILFHEFALFLQLHFPLMTTLTKLYVCPQSFDGPSTRDGHLIGALGRGVHRFGVGVSTSRSGLSLRKCRSFRGEDGGDNEKEDRKGRSRGDSRLKKVSTKKEAQFWKFLRSGFLGKVNLLLGSDFERGKLMANMEALFSSAAVQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDHVVVASRSPESVQETIRELEENLKGLMIRSGSSNTSLTHAKVVGTTCNVCDPEDVHNLAKFALNELGSIDIWINNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCTREAMRVMRSQAKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQSSLLKECKRSNVGVHAASPGMVLTDLLLSGSTVRNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDEKGKALYAAEADRIRNWAENRTRFSFTDAMEMYTENTWVSVFSLSVTHFIVFDFCFSSELKFSAKMSSPAPTSPPGTNSTSPPPPTADAPPPSPPSLSPPPPASSPPPPNSTTPSPPTSSPSPPVVPSSSPPPPPTNSTAPPQLPSPTPPSNSDTPANPGGGQAPPSETAPSPSTSSGVSAGLVSGVVVGVVVVVVALIAMCFYLRKKRRRDEEAYYRPPPPPAPPAAFKDGPYGPQQHHWQSHPPPPGDHIAGTVPKPSPPPASRPPPSPPIINSSGGSGSNYSGSENSLAPAPSSVPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDPTQSFMDDGLLDWARPLLLRATENGNYDGLVDPKLRDNHDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSDF | 1196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2924930 | 2933387 | + | CmaCh11G006110.1 | Cma11g00611 | 303120 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00611 | 1196 | Gene3D | Phosphorylase Kinase; domain 1 | 834 | 936 | - | - | |
Cma11g00611 | 1196 | Gene3D | - | 268 | 523 | - | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
Cma11g00611 | 1196 | Pfam | Protein tyrosine and serine/threonine kinase | 865 | 1134 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00611 | 1196 | Pfam | short chain dehydrogenase | 274 | 477 | IPR002347 | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 817 | 838 | - | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 617 | 696 | - | - | |
Cma11g00611 | 1196 | Gene3D | Transferase(Phosphotransferase) domain 1 | 937 | 1145 | - | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 697 | 721 | - | - | |
Cma11g00611 | 1196 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 613 | 1190 | - | - | |
Cma11g00611 | 1196 | ProSitePatterns | Protein kinases ATP-binding region signature. | 867 | 889 | IPR017441 | GO:0005524 | |
Cma11g00611 | 1196 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 613 | 1190 | - | - | |
Cma11g00611 | 1196 | PRINTS | Glucose/ribitol dehydrogenase family signature | 364 | 375 | IPR002347 | - | |
Cma11g00611 | 1196 | PRINTS | Glucose/ribitol dehydrogenase family signature | 461 | 478 | IPR002347 | - | |
Cma11g00611 | 1196 | PRINTS | Glucose/ribitol dehydrogenase family signature | 274 | 291 | IPR002347 | - | |
Cma11g00611 | 1196 | PRINTS | Glucose/ribitol dehydrogenase family signature | 440 | 459 | IPR002347 | - | |
Cma11g00611 | 1196 | CDD | SDR_c | 275 | 505 | - | - | |
Cma11g00611 | 1196 | SUPERFAMILY | Protein kinase-like (PK-like) | 837 | 1134 | IPR011009 | - | |
Cma11g00611 | 1196 | ProSiteProfiles | Protein kinase domain profile. | 861 | 1140 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 792 | 816 | - | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 607 | 721 | - | - | |
Cma11g00611 | 1196 | MobiDBLite | consensus disorder prediction | 754 | 838 | - | - | |
Cma11g00611 | 1196 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 981 | 993 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g00611 | 1196 | SMART | serkin_6 | 861 | 1134 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00611 | 1196 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 273 | 503 | IPR036291 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00611 | Cma12g01250 | CCT | |
Cma10g00621 | Cma11g00611 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00621 | Cma-Chr10:2859964 | Cma11g00611 | Cma-Chr11:2924930 | 0 | dispersed | |
Cma11g00611 | Cma-Chr11:2924930 | Cma20g00855 | Cma-Chr20:4104105 | 3.78E-161 | dispersed | |
Cma15g00537 | Cma-Chr15:2497338 | Cma11g00611 | Cma-Chr11:2924930 | 8.66E-63 | dispersed | |
Cma10g00620 | Cma-Chr10:2854683 | Cma11g00611 | Cma-Chr11:2924930 | 0 | wgd | |
Cma11g00611 | Cma-Chr11:2924930 | Cma12g01250 | Cma-Chr12:9778780 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68888 | PF07714 | PK_Tyr_Ser-Thr | 4.20E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00611 | K13606 | - | csv:101222986 | 931.013 |