Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00611 ATGGGAATGGATGCTCACATTAGACCCACCACGCCACGTGTCATATTTGTCGTACAAGGATTAGGTTGCTTATCGTGTGGTCATCACAGTCCTTTCTTCTCCGATCACCTAGAACGTTACCGCCCGTTTCTTATTTTGTTTCTTCTATATAATTTTTCCAAAAAAATCTCGATACAACATTACCCGTTTCCCAGAAAAATCGGAGCCATCCTGTTTCATGAATTTGCACTTTTTCTTCAGCTCCATTTTCCATTAATGACTACACTCACGAAGCTTTACGTGTGCCCACAAAGCTTCGATGGCCCAAGTACTAGAGATGGGCACTTGATCGGAGCTCTTGGACGGGGAGTCCACCGGTTTGGCGTTGGCGTGTCGACGAGCCGTAGTGGATTAAGCTTGAGGAAGTGTAGATCCTTCAGAGGCGAGGATGGTGGGGATAATGAGAAGGAGGATCGTAAAGGGAGGAGTCGTGGAGATTCGAGGTTAAAAAAGGTGTCAACAAAGAAGGAAGCTCAGTTTTGGAAATTTTTGAGGTCTGGTTTTTTGGGTAAGGTTAATTTGCTTTTGGGGTCGGATTTTGAACGGGGGAAGCTTATGGCTAATATGGAGGCTTTGTTTTCTTCGGCTGCAGTCCAAATTGGAAGATATATCGTTACAATGATGAGCACTGGTGTTGTACTTGCTGTTGGGTTTCAATTATCCGGTGGTGACAGCCAGATGAACACACTGATTTGGTATAGTTGGCTCGGAGGGGTTATTATTGGAACCATGATTGGTGCTAACATGGTATTAGAGGAGCATTGCAGAGCTGGTCCACGCAACGTTGTTATAACTGGAAGCACAAGAGGATTGGGGAAAGCACTAGCCAGAGAGTTTCTTCTCTCCGGAGACCACGTAGTTGTGGCTTCTCGCAGCCCTGAGTCTGTTCAAGAGACTATTAGAGAGCTGGAGGAGAACTTAAAAGGTCTAATGATCAGAAGTGGTTCTTCCAATACAAGCCTGACACATGCTAAAGTTGTTGGCACAACATGCAATGTTTGCGACCCTGAAGATGTTCATAATTTGGCGAAGTTTGCTTTAAATGAACTTGGTTCCATTGACATTTGGATAAACAACGCGGGCACGAACAAAGGCTTTAGACCCTTGCTGCAGTTCACAGATGAAGATATTACTCAGATTCTCTCAACAAACCTCGTCGGTTCCCTTCTTTGTACTCGAGAAGCCATGCGTGTAATGAGAAGTCAGGCTAAAGGAGGACACATTTTTAACATGGATGGTGCCGGCTCTGGAGGTTCAAGTACTCCTTTGACGGCTGTGTATGGATCGACAAAATGTGGTCTTAGACAGCTTCAATCATCTCTTTTGAAAGAATGCAAGCGGTCCAATGTAGGAGTACATGCTGCATCACCTGGCATGGTTTTGACAGATCTCCTTCTTAGTGGTTCAACTGTGAGAAACAAACAGATGTTCAATATCATTTGCGAGCTTCCTGAAACAGTGGCTAGAACATTAGTTCCTCGAATGCGGGTCGTGAAAGGAACAGGGAAAGCCATCAACTACTTGACTCCTCCAAGAATCTTATTAGCTCTTGTCACGGCTTGGCTGCGACGAGGTCGGTGGTTTGACGAGAAGGGGAAGGCTCTTTATGCAGCGGAGGCAGACAGAATCCGAAACTGGGCCGAAAATCGCACTCGTTTCTCCTTCACTGATGCAATGGAGATGTACACAGAGAACACCTGGGTGTCTGTGTTCTCCCTTTCGGTGACCCATTTCATTGTTTTCGATTTCTGCTTCTCTTCTGAACTGAAATTTTCGGCGAAAATGTCGTCTCCTGCTCCCACCTCGCCGCCGGGGACTAACTCGACCTCACCCCCACCACCGACCGCGGATGCACCACCTCCATCACCTCCATCTCTCTCACCTCCTCCGCCTGCTTCATCGCCGCCGCCTCCGAACAGTACCACTCCATCTCCGCCTACTTCTTCTCCTTCCCCGCCGGTCGTGCCTTCGAGCTCTCCCCCGCCGCCGCCTACCAACTCGACGGCTCCACCGCAGCTTCCGAGTCCGACGCCGCCGTCCAATTCTGATACACCTGCGAATCCAGGAGGAGGTCAGGCTCCGCCGTCGGAAACGGCGCCGTCTCCCTCAACATCTTCGGGAGTTTCGGCGGGACTTGTGTCTGGGGTTGTCGTTGGAGTGGTGGTGGTGGTTGTAGCGTTGATTGCTATGTGTTTTTATCTAAGAAAGAAGAGGAGACGCGACGAGGAGGCGTACTACCGGCCACCGCCGCCGCCTGCGCCACCGGCGGCGTTTAAAGACGGCCCATACGGTCCCCAACAGCACCATTGGCAATCACATCCGCCGCCGCCAGGGGATCATATCGCGGGGACAGTACCAAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCCGTCACCCCCGATTATAAACAGTAGCGGAGGGTCTGGATCTAATTATTCAGGGTCTGAAAATTCGTTGGCTCCAGCTCCATCTTCTGTTCCCTTAGGGTTCTCACAGAGCAGTTTCACTTACGAAGAATTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTCGGACAAGGTGGGTTCGGTTATGTGCATAAAGGAGTTCTTCCAAACGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGCGGACAAGGAGAGCGTGAATTTCAAGCAGAAGTTGAAATCATCAGCCGAGTTCATCATAGGCATCTGGTTTCTTTGGTCGGATATTGCATCACTGGCTCCCAAAGATTGCTGGTTTATGAATTCGTTCCCAACAACACATTGGAGTTTCACTTGCACGGGAAAGGACGACCTACCATGGATTGGCCAACCAGGCTCAAAATCGCTTTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAACATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCCAAGTTGTCTTCTGATGTTAATACCCATGTTTCAACTCGAGTCATGGGCACTTTCGGATATCTTGCTCCTGAATACGCTTCAAGTGGGAAACTAACTGAGAAATCAGATGTGTTCTCCTATGGAGTAATGCTTCTGGAGTTGATTACTGGACGCAGACCTGTTGATCCAACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGGGCAACAGAAAATGGAAACTACGACGGTTTGGTAGATCCAAAGCTGCGAGATAACCACGACCACAACGAGATGGCGCGCATGGTTGCTTGCGCCGCGGCCTGTGTGCGTCATTCGGCGAGGCGTCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGAGAAGCCTCGCTTTCTGATCTGAACGAAGGAATCCGACCTGGACATAGCACTGTGTACAGTTCTTATGGAAGCTCCGACTACGACACGGCTCAGTACAACGAGGATCTGAAGAAGTTCAGGAAGATGGCGTTGGCGAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCGACGAGCGACTTTTAA 3591 49.4 MGMDAHIRPTTPRVIFVVQGLGCLSCGHHSPFFSDHLERYRPFLILFLLYNFSKKISIQHYPFPRKIGAILFHEFALFLQLHFPLMTTLTKLYVCPQSFDGPSTRDGHLIGALGRGVHRFGVGVSTSRSGLSLRKCRSFRGEDGGDNEKEDRKGRSRGDSRLKKVSTKKEAQFWKFLRSGFLGKVNLLLGSDFERGKLMANMEALFSSAAVQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDHVVVASRSPESVQETIRELEENLKGLMIRSGSSNTSLTHAKVVGTTCNVCDPEDVHNLAKFALNELGSIDIWINNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCTREAMRVMRSQAKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQSSLLKECKRSNVGVHAASPGMVLTDLLLSGSTVRNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDEKGKALYAAEADRIRNWAENRTRFSFTDAMEMYTENTWVSVFSLSVTHFIVFDFCFSSELKFSAKMSSPAPTSPPGTNSTSPPPPTADAPPPSPPSLSPPPPASSPPPPNSTTPSPPTSSPSPPVVPSSSPPPPPTNSTAPPQLPSPTPPSNSDTPANPGGGQAPPSETAPSPSTSSGVSAGLVSGVVVGVVVVVVALIAMCFYLRKKRRRDEEAYYRPPPPPAPPAAFKDGPYGPQQHHWQSHPPPPGDHIAGTVPKPSPPPASRPPPSPPIINSSGGSGSNYSGSENSLAPAPSSVPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDPTQSFMDDGLLDWARPLLLRATENGNYDGLVDPKLRDNHDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSDF 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2924930 2933387 + CmaCh11G006110.1 Cma11g00611 303120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00611 1196 Gene3D Phosphorylase Kinase; domain 1 834 936 - -
Cma11g00611 1196 Gene3D - 268 523 - -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 142 163 - -
Cma11g00611 1196 Pfam Protein tyrosine and serine/threonine kinase 865 1134 IPR001245 GO:0004672|GO:0006468
Cma11g00611 1196 Pfam short chain dehydrogenase 274 477 IPR002347 -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 817 838 - -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 617 696 - -
Cma11g00611 1196 Gene3D Transferase(Phosphotransferase) domain 1 937 1145 - -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 697 721 - -
Cma11g00611 1196 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 613 1190 - -
Cma11g00611 1196 ProSitePatterns Protein kinases ATP-binding region signature. 867 889 IPR017441 GO:0005524
Cma11g00611 1196 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 613 1190 - -
Cma11g00611 1196 PRINTS Glucose/ribitol dehydrogenase family signature 364 375 IPR002347 -
Cma11g00611 1196 PRINTS Glucose/ribitol dehydrogenase family signature 461 478 IPR002347 -
Cma11g00611 1196 PRINTS Glucose/ribitol dehydrogenase family signature 274 291 IPR002347 -
Cma11g00611 1196 PRINTS Glucose/ribitol dehydrogenase family signature 440 459 IPR002347 -
Cma11g00611 1196 CDD SDR_c 275 505 - -
Cma11g00611 1196 SUPERFAMILY Protein kinase-like (PK-like) 837 1134 IPR011009 -
Cma11g00611 1196 ProSiteProfiles Protein kinase domain profile. 861 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00611 1196 MobiDBLite consensus disorder prediction 792 816 - -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 607 721 - -
Cma11g00611 1196 MobiDBLite consensus disorder prediction 754 838 - -
Cma11g00611 1196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 981 993 IPR008271 GO:0004672|GO:0006468
Cma11g00611 1196 SMART serkin_6 861 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00611 1196 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 273 503 IPR036291 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00611 Cma12g01250 CCT
Cma10g00621 Cma11g00611 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00621 Cma-Chr10:2859964 Cma11g00611 Cma-Chr11:2924930 0 dispersed
Cma11g00611 Cma-Chr11:2924930 Cma20g00855 Cma-Chr20:4104105 3.78E-161 dispersed
Cma15g00537 Cma-Chr15:2497338 Cma11g00611 Cma-Chr11:2924930 8.66E-63 dispersed
Cma10g00620 Cma-Chr10:2854683 Cma11g00611 Cma-Chr11:2924930 0 wgd
Cma11g00611 Cma-Chr11:2924930 Cma12g01250 Cma-Chr12:9778780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68888 PF07714 PK_Tyr_Ser-Thr 4.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00611 K13606 - csv:101222986 931.013