Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00619 ATGGGAGGCGAAATCAGCGGTGGTGCACCACGTGTCGGGGTACAACAAAAATGCGGTGATCCGAATTGGGCTACGTTAATTTATGGTACGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGTCGGTGCAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCAACGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGGGAGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGATAGTCCTGGACTTGCTCCTGGGCCATTTAGAGGTGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGGAAGACGAGAATTTTGTAACAAATGCAACAGACCCCGCACTGGAGCTGGTGGAAGACCTCGAAGAGGCCATGTTGGTGGTCCACCATCCCTGCATTCTCCTCCTAGACGCTTTACTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCCTAATGAATATAGGTCTCCTCCCCGTGCTTGGACCAGGGGTTGTTCCAGGGACATTGCAGCTGGTGGTCTGGCACCTCAGAGGTATGAAAACAGGTACTCCGACCTGCGGAGGGATCGGGTGGATTATCTAGAAGACAGCTTCAGAGGAAGGTCCAAGTTCGACAGGCCAATTCTTTCCGATTGGCCCCTTAGAGACCATGAAAGAGATGAGTTCATCCCCGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAGCGTGGCCGCTGGGCACGTGATGTGAGAGAGAGGAGCCGCTCCCCAATTAGAGATCCAATTAGATCTCCATTGAGAGTCTCGCTTCGGTCTCCACGCGGCCTTCCACCAAAAGACTTCCGTAGAGATGTGTTTGTCGAAAGGGAGCACATTTATAGGCGCGGCCTTGGACAAGAGCGCGATGGAGAGCATCCGGAGATGGACGATTTACCCCCGCCAAGTGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGCTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTTACCAGAGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCACTCGGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCAAAGTCCCCTCAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGCGAGAAAGCCAGATTTTCCAAAGTCACGATCAAGGTCTGTAGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGTAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCCTCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAGAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAACTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCTCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATGCCCCCTTCAACGGCATAGCACAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGAACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATTTAGCAGAACAAAGAATTGCTGTGAAGCAGATAAATGATTCACTACAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGCTTCAGAAGACAGATGCGAAAGCCGCAGATGTTGAGTGTGAAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATAGTTCGGACACGACAACGGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAATCACAGCAAGAATTTCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCAGAATACCACTGATCGATGCTGCAGCTCATCATACTAGTAATAAAATTCTAACCCTACCTGAAAATGGGAAAGAGTAA 3006 47.67 MGGEISGGAPRVGVQQKCGDPNWATLIYGTTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGVGATSGGRVGRGSDYEAGEVPRDPPQYSRLDRYSADLGYRIHAGSASPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGHVGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLAPQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIYRRGLGQERDGEHPEMDDLPPPSAQTGSEEPDSVVAFDVTAKKLARQLDFAEFGGAVLPELPHFQSQSRCHSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAARKPDFPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRESRDEIGEVVMLGKHNKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGSELCFGPTGKDAPFNGIAQFHQANNMLSSGASTSSPLPVAHVGSPAAPEPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNLAEQRIAVKQINDSLQISRASTGDRSQLQKTDAKAADVECESLNQGDRIVHHNSNSDSSDTTTARPMSPGTLALMCDEQDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNFTSNSGYRQRIISNGVIKNVALSAPRIPLIDAAAHHTSNKILTLPENGKE 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2966019 2979367 - CmaCh11G006190.1 Cma11g00619 303128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00619 1001 MobiDBLite consensus disorder prediction 147 204 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 59 82 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 367 382 - -
Cma11g00619 1001 ProSiteProfiles Zinc finger RanBP2 type profile. 205 236 IPR001876 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 515 537 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 39 109 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 347 403 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 843 864 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 594 616 - -
Cma11g00619 1001 SMART CXC_2 542 582 IPR033467 -
Cma11g00619 1001 SMART CXC_2 627 668 IPR033467 -
Cma11g00619 1001 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 482 962 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 39 58 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 416 445 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 147 169 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 231 281 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 416 431 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 523 537 - -
Cma11g00619 1001 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 544 579 IPR005172 -
Cma11g00619 1001 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 630 664 IPR005172 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g00619 1001 ProSiteProfiles CRC domain profile. 543 667 IPR005172 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 846 864 - -
Cma11g00619 1001 ProSitePatterns Zinc finger RanBP2-type signature. 209 230 IPR001876 -
Cma11g00619 1001 Gene3D - 196 236 - -
Cma11g00619 1001 PANTHER TESMIN/TSO1-RELATED 482 962 IPR028307 -
Cma11g00619 1001 SUPERFAMILY Ran binding protein zinc finger-like 198 236 IPR036443 -
Cma11g00619 1001 SMART zf_4 207 233 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00619 - - - csv:101222405 854.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00635 Cma11g00619 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01388 Cma-Chr6:9004384 Cma11g00619 Cma-Chr11:2966019 2.19E-32 dispersed
Cma11g00619 Cma-Chr11:2966019 Cma14g01734 Cma-Chr14:12723480 2.28E-30 dispersed
Cma10g00635 Cma-Chr10:2907510 Cma11g00619 Cma-Chr11:2966019 0 transposed
Cma10g00634 Cma-Chr10:2900631 Cma11g00619 Cma-Chr11:2966019 0 wgd
Cma11g00619 Cma-Chr11:2966019 Cma12g01257 Cma-Chr12:9804970 1.14E-169 wgd
Cma11g00619 Cma-Chr11:2966019 Cma05g01345 Cma-Chr5:10160668 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g317 . . . . Bpe01g00537 . . Bma11g00523 Cmo10g00669 . . . . . . Cpe04g01121 Cpe18g00420 . . . . . . . . . . . . . . . . Cone4ag0741 . Lsi06g00856 . . . . Blo14g00501 Bda02g00437 . . . . . . . . Cma10g00635 Cma11g00619 Car10g00583 Car11g00500 . . . . . . . . . . . . . . . . . . Chy02g01849 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g01345 CCT,CST,ECH 136 566 CPP Transcription Factor Family AT2G20110 59.9 6.2e-136 481.9
Cma12g01257 CCT,CST,ECH 90 497 CPP Transcription Factor Family AT2G20110 59.0 3.5e-123 439.5
Cma10g00634 CCT,ECH 94 545 CPP Transcription Factor Family AT2G20110 53.4 1.0e-122 438.0
Cma11g00619 CST 518 944 CPP Transcription Factor Family AT2G20110 52.9 1.4e-116 417.5
Cma05g01345 CCT,CST,ECH 139 628 CPP Transcription Factor Family AT4G29000 57.0 2.1e-145 513.5
Cma10g00634 CCT,ECH 67 517 CPP Transcription Factor Family AT4G29000 58.2 2.5e-138 490.0
Cma11g00619 CST 489 938 CPP Transcription Factor Family AT4G29000 55.3 2.4e-133 473.4
Cma12g01257 CCT,CST,ECH 99 497 CPP Transcription Factor Family AT4G29000 61.2 1.9e-130 463.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007101 1 4 1 1 1 1 2 1 1 1 1 0 2 1 1 0 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35825 PF03638 TCR 9.30E-12 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00619 Cma_Chr11 FPKM 9.013972 10.269252 12.059081 10.976066 10.772905 10.305721 10.235028 14.965517 15.076331 15.252369