Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00619 ATGGGAGGCGAAATCAGCGGTGGTGCACCACGTGTCGGGGTACAACAAAAATGCGGTGATCCGAATTGGGCTACGTTAATTTATGGTACGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGTCGGTGCAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCAACGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGGGAGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGATAGTCCTGGACTTGCTCCTGGGCCATTTAGAGGTGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGGAAGACGAGAATTTTGTAACAAATGCAACAGACCCCGCACTGGAGCTGGTGGAAGACCTCGAAGAGGCCATGTTGGTGGTCCACCATCCCTGCATTCTCCTCCTAGACGCTTTACTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCCTAATGAATATAGGTCTCCTCCCCGTGCTTGGACCAGGGGTTGTTCCAGGGACATTGCAGCTGGTGGTCTGGCACCTCAGAGGTATGAAAACAGGTACTCCGACCTGCGGAGGGATCGGGTGGATTATCTAGAAGACAGCTTCAGAGGAAGGTCCAAGTTCGACAGGCCAATTCTTTCCGATTGGCCCCTTAGAGACCATGAAAGAGATGAGTTCATCCCCGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAGCGTGGCCGCTGGGCACGTGATGTGAGAGAGAGGAGCCGCTCCCCAATTAGAGATCCAATTAGATCTCCATTGAGAGTCTCGCTTCGGTCTCCACGCGGCCTTCCACCAAAAGACTTCCGTAGAGATGTGTTTGTCGAAAGGGAGCACATTTATAGGCGCGGCCTTGGACAAGAGCGCGATGGAGAGCATCCGGAGATGGACGATTTACCCCCGCCAAGTGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGCTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTTACCAGAGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCACTCGGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCAAAGTCCCCTCAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGCGAGAAAGCCAGATTTTCCAAAGTCACGATCAAGGTCTGTAGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGTAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCCTCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAGAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAACTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCTCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATGCCCCCTTCAACGGCATAGCACAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGAACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATTTAGCAGAACAAAGAATTGCTGTGAAGCAGATAAATGATTCACTACAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGCTTCAGAAGACAGATGCGAAAGCCGCAGATGTTGAGTGTGAAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATAGTTCGGACACGACAACGGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAATCACAGCAAGAATTTCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCAGAATACCACTGATCGATGCTGCAGCTCATCATACTAGTAATAAAATTCTAACCCTACCTGAAAATGGGAAAGAGTAA 3006 47.67 MGGEISGGAPRVGVQQKCGDPNWATLIYGTTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGVGATSGGRVGRGSDYEAGEVPRDPPQYSRLDRYSADLGYRIHAGSASPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGHVGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLAPQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIYRRGLGQERDGEHPEMDDLPPPSAQTGSEEPDSVVAFDVTAKKLARQLDFAEFGGAVLPELPHFQSQSRCHSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAARKPDFPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRESRDEIGEVVMLGKHNKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGSELCFGPTGKDAPFNGIAQFHQANNMLSSGASTSSPLPVAHVGSPAAPEPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNLAEQRIAVKQINDSLQISRASTGDRSQLQKTDAKAADVECESLNQGDRIVHHNSNSDSSDTTTARPMSPGTLALMCDEQDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNFTSNSGYRQRIISNGVIKNVALSAPRIPLIDAAAHHTSNKILTLPENGKE 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2966019 2979367 - CmaCh11G006190.1 Cma11g00619 303128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00619 1001 MobiDBLite consensus disorder prediction 147 204 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 59 82 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 367 382 - -
Cma11g00619 1001 ProSiteProfiles Zinc finger RanBP2 type profile. 205 236 IPR001876 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 515 537 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 39 109 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 347 403 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 843 864 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 594 616 - -
Cma11g00619 1001 SMART CXC_2 542 582 IPR033467 -
Cma11g00619 1001 SMART CXC_2 627 668 IPR033467 -
Cma11g00619 1001 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 482 962 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 39 58 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 416 445 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 147 169 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 231 281 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 416 431 - -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 523 537 - -
Cma11g00619 1001 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 544 579 IPR005172 -
Cma11g00619 1001 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 630 664 IPR005172 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g00619 1001 ProSiteProfiles CRC domain profile. 543 667 IPR005172 -
Cma11g00619 1001 MobiDBLite consensus disorder prediction 846 864 - -
Cma11g00619 1001 ProSitePatterns Zinc finger RanBP2-type signature. 209 230 IPR001876 -
Cma11g00619 1001 Gene3D - 196 236 - -
Cma11g00619 1001 PANTHER TESMIN/TSO1-RELATED 482 962 IPR028307 -
Cma11g00619 1001 SUPERFAMILY Ran binding protein zinc finger-like 198 236 IPR036443 -
Cma11g00619 1001 SMART zf_4 207 233 IPR001876 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00635 Cma11g00619 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01388 Cma-Chr6:9004384 Cma11g00619 Cma-Chr11:2966019 2.19E-32 dispersed
Cma11g00619 Cma-Chr11:2966019 Cma14g01734 Cma-Chr14:12723480 2.28E-30 dispersed
Cma10g00635 Cma-Chr10:2907510 Cma11g00619 Cma-Chr11:2966019 0 transposed
Cma10g00634 Cma-Chr10:2900631 Cma11g00619 Cma-Chr11:2966019 0 wgd
Cma11g00619 Cma-Chr11:2966019 Cma12g01257 Cma-Chr12:9804970 1.14E-169 wgd
Cma11g00619 Cma-Chr11:2966019 Cma05g01345 Cma-Chr5:10160668 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35825 PF03638 TCR 9.30E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00619 - - csv:101222405 854.744