Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00623 ATGAATAGAGGGGCGTTGCAGAGCTCAGTTATGCAGCAACAAATCATGGGCTCAGAAAACCCTAGCTGGTGGCATATGGTGAACAGTGGCAGCATTAGAACATCATCCACCCAGCAATCTTCTCCCAATAATAATTCTCCCAATTTCCTTTTCCCTCACTCTTCCCTTCCCCTTCCTTCTAATTTCCTCTATGATTTTTCTCAAGACAAGGATCAGCTTCCAGAATCTTGGAGCCACCTTCTCTTGGGTGGTTTAGTGGGTGAAGATGATCAAAAGGGTTGTATGGGGGGAATGTTTCAAGGCAAGAAATTGGAGGATTGGGAAGAGGAGATTTTGAATACTAACACTACTACTCACCACCAACAACATGTTGATGTCAAGAAGGAGAACTCAGTTCATGCAACCTCCTGCGCCTATGTTTATGGACATGGTGGTAGCGGTGGCGGTGTCGATGCCGATAATTATCCTTCGTTGCCTCCGAAACAAAACTGGTCGTCTATCATACCGGTCTCGTCTCCTCAGTCATGTGTCACAAGTTTCAGTAGTAACATGTTGGATTTTTCAAACAATAATACCAACTCTCCTCCTGATTCTCGCCCTCGACATCTCCCTCCTGATCGCTCCTCCGAGTGTAACAGCAATGCAGCAGGTGGTGGGGCAGTGAAGAAGGCCAGAGTTCAATCCTCTTCAAACCAAACCACTTTCAAGGTGAGGAAGGAAAAATTAGGTGACAGAATTACCGCTCTCCACCAGCTAGTTTCCCCATTTGGGAAGACTGACACAGCTTCAGTTTTGTTAGAAGCTATTGGATACATCAGATTCCTTCACAGTCAAATTGAGGCCCTCAGCTTACCCTACTTGGGCAATACTTCGGCAAGTACGAGGCAGCTCCAACAACATTCTGATGAAGAGGGAAAGAAGGATCTGAGGAGTAGAGGACTGTGTCTGGTTCCAGTCTCCTGCACCCTGCAAGTTGGGAGTGACAATGGAGCAGATTATTGGGCTCCGGCGTTCGGCGGTGGTGGTTTCCGTCAAGCCGGCCGCGGCGGCACTGTACTTGCCCTTTATTATATTCACCAAAATTCCTGCCGGCAATCAGAATCATCATCCTGCGTTCGCCTCACTTTCGGCCATATTCTATTTTCTTCCACCAATTCGACCACCATCGTTACCGGTGCAATGGTGGCCACCGGTGCCATCACCGCGTCGAGTATTCTCCACCACATATCCGCCTTCATCTCTGAAATACTTGCCCAATCCGAACTCCGAAAGCGCCTCCTCTCCGTCGTGTACGGCATAATCTCACTCTCAGACGAGATTGCCCTAAAACCCCTAGAGCTTGCAGCCGAAGCTCTCGAAAATGCCATCTTCACCGATAACTCTTCGATCAAATCCTCTTCTCTGCGTTGCGCGGAAGAATTACTCCTCTCCGTTCCTGAAAACGCCTGTTCTTCTTTTCTATTATCCCTAATTTACGGCCTCAATCACCAAAATCTCAACTCCGCTCTTAATCTCCTCCATTTATTCCTCTCGGACCCTTCGTTGGCTCGCTCCGAAATCGCTCCGATTCTCTTCGAGGAGCTCTTTCTCCGCCATTTTCTTCCAATTATTCACTGGTTCCACCAACAGAGATTCCAAATCCTGACGTTCTTCCCCTCGAATTTAATCAACAACACTACCGAACATTCAATCGGCGATGAGCCGGAGGTTTTTCCTTGCACGAAATCGTTATCGAAGTTGAGCATTGATCAGACTTTGAAGCTGAAGGAACTGGAAAGCAATTACGAGCGGGTTTTGGACAAAAATTGCAGAGTTTTTGCTGAACATTTCAAAAGGGTTTTGGAAAGAAAAGACAATGGTGGATCGATCGCAATTCCAATGGTTAAATTATTGGATAAGAACGAGAAGTGGAAGGAAATGGAACAGATTGCAAAACAGAAACTCAGAACAGAGCAGCTCTGTTTCCCCAATGGACGGTATAATCCAATTTGGATCGAAGAAGAACAAACGCTCGAAGTTGACTTTACCAACAAATCAAAGTCAGCGTCGCCGCCGTGTGTTCGTTCCCAAGTATTCGGACCTTTCAATCTCATTTCCGAGCAAGAATCATCCAGCAGCTCGAGAACTTTTTCCATCTTCAAGTCGACTGCCCAAGACCAAGACGATTCTTCTGAAATTTTCTCGTTGGGATCTGAGACTGAATTCGAGGAAAATGACCACGAAAAGACATTGTTTGATTCTGGACAGCCGAAACCCAAGAACCAGAAGCTAAAACAGACCATAACCCAATCATTGGAGTTGGATTATGCTATGGAAAATTCCCGCAGCGCCTCGCCGGAAAGTGGTGAAAAGCATATTACACCTCCTAAGGACTTTGTATGTCCCATAACTTGCAACATTTTTTATGACCCAGTTACTATAGAGACGGGTCAGACTTATGAGCGCAGTGCCATTCAAGAATGGCTTGATAGAGGTAACTTGACCTGCCCAATCACTGGACAGAAGCTGCAAAATACCCAACTTCCCAAAACCAATTATGTCCTCAAACGACTTATTGCAAGCTGGCTAGAGGAGAATCCCAATTTTGTATTGGACAAAGCTCTTGATGAGGCTGAATCAGTGGCTGTTTTAACCTCACCTGTTAGTTTCATAAGCCAAGCCTCCATTGACAGAAGTATGGAGATGAGGCGTGCAATTACCAATCTCTGTACTTCTGAAGTTTTGGAGGAGGCGGAAACTGCCGTGCTTTGTGTGGAGAGGTTCTGGTTGGAAGAAAATGTGGAAGGGAATGTTCAACATATGTTGTTGAAGCCTTCTGTAATTAATGGACTTGTTGAGATCCTTGTCAATTCTGTTGATCTTCAGGTCTTGAGAGCGGCAATCTTTCTTCTATCAGAGCTGGGATTCAAGGGTGATATTGTGATCGAAACGCTCACTCGAGTCGAGTCAGATGTGAACTGTATTGTGACTCTTTTCAAAAGAGGTGTTGTCGAGGCTGTTCTGCTAATATATCAGTTGGGACTTTCCAGCCAAACTTTACAAGAAATGGATATAGTCGGTTCCCTTTTGAATGTTGTTAAAAAGAAAGAAGAAGATGTGAATAAGATGCATTTGAGCCATAAATCTGCTGCAGTGCTTTTGCTTAGAAAGATTTTGGGGAGTAAAGAAGGATCTCCGACTGTTGTTGCTGTGCTTGCTGAAAATGCAATTGAAAGTATTTTAGGTAGTTTGAAAGCCAAGCAGGTGGAGGAGCGGATTGCTGCAGTTGGAATCTTGCTAAGATGCATTCAGGAGGATTGGAAGTGTAGAAATATTATAGCTGATAAAGCCGACTTAGCTCTGATTTTGTCAAGTTTCACGAAAGTGAGTAACGGCGAACAATTCGAGATCATTATGTTTCTCTCTGAGTTGGTTAAGTTAAACAGGAGGACTTCGAACGAAAAAATTCTTCGAAACATTAAGGATGGAAGCGAATGTAGCACTATGCACTCCCTTTTGACGTACTTACAAACTGCCCACAGAGATCAATGCCCTGTAGTGGCTGGTCTTTTGCTACAACTTGATATCTTGGTATGGGTGGAACCACTAAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTCCTTATTTCATGCCTCAGAGATTCTGATTTCCCAACAGCTCAAATTTCTGCTGCTGAGACGATAATGTCTTTACAAGGAAGGTTTAGCACCTCCGGACAGCCCTTAGCTAGGTATTTTCTTCTTGAACGTGCTGGCCTTACTAAGAATCACAGGAAACCCATAGGAACTGAGAATATTAGTGATGCTCTTGGAGAAGTTGAACTTACAAGGGAAGAAGATAAGGCAACTGATGAATGGGAAAGAAAAATGGCATTTGTACTTGTAAACCATGACTTTGGGTTGCTGCTTGAACCATTGGCAAAAGGCTTAAAGAGCAAATGTGCAGCGCTATTTTCAGCATGCTTTGTCTCTGCAACATGGCTGAGTCATATGCTTGGAACTCTTCCCGACACGGGGATTCTAGAAGCTGCTCGAATTTTCTTGCTCGATCACTTCTTATCGATTTTCACAATGACGACAGATATTGAAGAGAAAGCACTTGCCTTGCTAGCAATAAACAGTTTCGTACATGAACCCGAAGGACTGCAGTACCTAAGTTCCGACATGAAAAATATTATGAGAGGTCTCAAGGAATTTAGGAGATCAACACCATTGGCCTTTGATATGCTAAAAGTCCTATGTGAGGGACAAGACTCGAGTACTGAACTCTGGAGTCATCATGAATTGTTTAAAGTAGATTGCAGTAGAAATGGAGAAGTACTATCAATTGCTCATTGCAAGGACAGGATCATCTCTGGCCATTCAGATGGAACAATGAAGGTCTGGTCTGTTAAAGGCACTAATCTTCATCTCCTACAAGAAATTCAAGAGCACTCTAAGGGAGTCACCAGTCTAGCAGTTGCAGAATCCGAAGAGAAATTATACAGTGGCTCCTTAGACAAGACCATAAAGGTATGGTCTCTAGGTAGTGATATAGTCCAATGCATACAAGTTCACGATGTGAAGGAACAAATTCACAACTTAGTCGTATCAAAATCTGTTGCTTGCTTCATCCCCCATGGAGTTGGTATCAGGGTTTATTCATGGGCCGGGGAATCGAAGTTACTTAACTCAAGCAAACATGTCAAGTGTTTGAATCTTATGCATGGAAAACTATACTGTGGATGCCATGATAGTAGCATCCAGGAGGTTGATTTGGCTACAGGTACCGTAAGTTACATCCACAGTGGTTCTAGAAAACTATTGGGAAAGGCCAATCCTATCCATGCACTACAAGTTTACGACGAACAATTATTTTCAGCCAGTACTGCTTTAGATGGAGCAGCTGTGAAGATCCGGTGTAGGTCGAACTATGGTGTGATTGGATCACTGTCAACGGCAATGGATGTAAGAACTATGGCTGTAGGCTCAAATCTAACTTACTTGGGAGGTAAAGGAGGAGTGGTTGAAATTTGGAGCAGGGAAAAGCACAACAAAATAGATGCACTTCAAATTGGTAGAAACTGCAAGGTCGTTTGCATGAGTCTCAACGAACGGGAGGATGTTCTGGTCATCGGTACATCCGATGGTCGGATTCAGGTAGAATGTTTCTTCTATTTCAGATCACTTTTGCTTTATCAGAAACTTAAATCACCTCAATCTTACCATCATAGCTTGGGAACTATGACAGAGAAAGAAAGGATGGCACCGTGA 5256 43.99 MNRGALQSSVMQQQIMGSENPSWWHMVNSGSIRTSSTQQSSPNNNSPNFLFPHSSLPLPSNFLYDFSQDKDQLPESWSHLLLGGLVGEDDQKGCMGGMFQGKKLEDWEEEILNTNTTTHHQQHVDVKKENSVHATSCAYVYGHGGSGGGVDADNYPSLPPKQNWSSIIPVSSPQSCVTSFSSNMLDFSNNNTNSPPDSRPRHLPPDRSSECNSNAAGGGAVKKARVQSSSNQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHSQIEALSLPYLGNTSASTRQLQQHSDEEGKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGGFRQAGRGGTVLALYYIHQNSCRQSESSSCVRLTFGHILFSSTNSTTIVTGAMVATGAITASSILHHISAFISEILAQSELRKRLLSVVYGIISLSDEIALKPLELAAEALENAIFTDNSSIKSSSLRCAEELLLSVPENACSSFLLSLIYGLNHQNLNSALNLLHLFLSDPSLARSEIAPILFEELFLRHFLPIIHWFHQQRFQILTFFPSNLINNTTEHSIGDEPEVFPCTKSLSKLSIDQTLKLKELESNYERVLDKNCRVFAEHFKRVLERKDNGGSIAIPMVKLLDKNEKWKEMEQIAKQKLRTEQLCFPNGRYNPIWIEEEQTLEVDFTNKSKSASPPCVRSQVFGPFNLISEQESSSSSRTFSIFKSTAQDQDDSSEIFSLGSETEFEENDHEKTLFDSGQPKPKNQKLKQTITQSLELDYAMENSRSASPESGEKHITPPKDFVCPITCNIFYDPVTIETGQTYERSAIQEWLDRGNLTCPITGQKLQNTQLPKTNYVLKRLIASWLEENPNFVLDKALDEAESVAVLTSPVSFISQASIDRSMEMRRAITNLCTSEVLEEAETAVLCVERFWLEENVEGNVQHMLLKPSVINGLVEILVNSVDLQVLRAAIFLLSELGFKGDIVIETLTRVESDVNCIVTLFKRGVVEAVLLIYQLGLSSQTLQEMDIVGSLLNVVKKKEEDVNKMHLSHKSAAVLLLRKILGSKEGSPTVVAVLAENAIESILGSLKAKQVEERIAAVGILLRCIQEDWKCRNIIADKADLALILSSFTKVSNGEQFEIIMFLSELVKLNRRTSNEKILRNIKDGSECSTMHSLLTYLQTAHRDQCPVVAGLLLQLDILVWVEPLKMSIYREEAMDVLISCLRDSDFPTAQISAAETIMSLQGRFSTSGQPLARYFLLERAGLTKNHRKPIGTENISDALGEVELTREEDKATDEWERKMAFVLVNHDFGLLLEPLAKGLKSKCAALFSACFVSATWLSHMLGTLPDTGILEAARIFLLDHFLSIFTMTTDIEEKALALLAINSFVHEPEGLQYLSSDMKNIMRGLKEFRRSTPLAFDMLKVLCEGQDSSTELWSHHELFKVDCSRNGEVLSIAHCKDRIISGHSDGTMKVWSVKGTNLHLLQEIQEHSKGVTSLAVAESEEKLYSGSLDKTIKVWSLGSDIVQCIQVHDVKEQIHNLVVSKSVACFIPHGVGIRVYSWAGESKLLNSSKHVKCLNLMHGKLYCGCHDSSIQEVDLATGTVSYIHSGSRKLLGKANPIHALQVYDEQLFSASTALDGAAVKIRCRSNYGVIGSLSTAMDVRTMAVGSNLTYLGGKGGVVEIWSREKHNKIDALQIGRNCKVVCMSLNEREDVLVIGTSDGRIQVECFFYFRSLLLYQKLKSPQSYHHSLGTMTEKERMAP 1751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2998384 3009937 - CmaCh11G006230.1 Cma11g00623 303132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00623 1751 MobiDBLite consensus disorder prediction 187 234 - -
Cma11g00623 1751 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1476 1509 - -
Cma11g00623 1751 ProSiteProfiles U-box domain profile. 787 862 IPR003613 GO:0004842|GO:0016567
Cma11g00623 1751 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 400 1715 - -
Cma11g00623 1751 SMART Ubox_2 791 855 IPR003613 GO:0004842|GO:0016567
Cma11g00623 1751 Gene3D - 1543 1724 IPR015943 GO:0005515
Cma11g00623 1751 MobiDBLite consensus disorder prediction 733 747 - -
Cma11g00623 1751 MobiDBLite consensus disorder prediction 31 51 - -
Cma11g00623 1751 Pfam U-box domain 789 859 IPR003613 GO:0004842|GO:0016567
Cma11g00623 1751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 867 IPR013083 -
Cma11g00623 1751 CDD RING-Ubox_PUB 792 834 IPR045210 -
Cma11g00623 1751 Gene3D - 1406 1537 IPR015943 GO:0005515
Cma11g00623 1751 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Cma11g00623 1751 Gene3D - 227 301 IPR036638 GO:0046983
Cma11g00623 1751 MobiDBLite consensus disorder prediction 731 758 - -
Cma11g00623 1751 SMART WD40_4 1638 1674 IPR001680 GO:0005515
Cma11g00623 1751 SMART WD40_4 1469 1508 IPR001680 GO:0005515
Cma11g00623 1751 SMART WD40_4 1426 1464 IPR001680 GO:0005515
Cma11g00623 1751 SMART WD40_4 1677 1717 IPR001680 GO:0005515
Cma11g00623 1751 SUPERFAMILY ARM repeat 899 1232 IPR016024 -
Cma11g00623 1751 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 286 IPR036638 GO:0046983
Cma11g00623 1751 Gene3D - 893 1245 IPR011989 -
Cma11g00623 1751 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 400 1715 - -
Cma11g00623 1751 SUPERFAMILY RING/U-box 776 863 - -
Cma11g00623 1751 SUPERFAMILY WD40 repeat-like 1432 1715 IPR036322 GO:0005515
Cma11g00623 1751 CDD bHLH_AtbHLH_like 234 283 IPR045239 -
Cma11g00623 1751 ProSiteProfiles Trp-Asp (WD) repeats profile. 1476 1509 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00637 Cma11g00623 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01931 Cma-Chr1:12539255 Cma11g00623 Cma-Chr11:2998384 1.07E-35 dispersed
Cma03g00720 Cma-Chr3:5810533 Cma11g00623 Cma-Chr11:2998384 3.92E-31 dispersed
Cma06g01683 Cma-Chr6:10371365 Cma11g00623 Cma-Chr11:2998384 3.42E-33 dispersed
Cma09g00137 Cma-Chr9:595234 Cma11g00623 Cma-Chr11:2998384 1.67E-34 dispersed
Cma11g00623 Cma-Chr11:2998384 Cma18g00540 Cma-Chr18:3448454 5.90E-42 dispersed
Cma13g00446 Cma-Chr13:4984279 Cma11g00623 Cma-Chr11:2998384 2.47E-34 dispersed
Cma19g00571 Cma-Chr19:6420766 Cma11g00623 Cma-Chr11:2998384 5.62E-30 dispersed
Cma11g00622 Cma-Chr11:2992255 Cma11g00623 Cma-Chr11:2998384 0 tandem
Cma04g00972 Cma-Chr4:4999755 Cma11g00623 Cma-Chr11:2998384 3.31E-30 transposed
Cma09g00101 Cma-Chr9:445158 Cma11g00623 Cma-Chr11:2998384 5.49E-17 transposed
Cma14g01615 Cma-Chr14:12125704 Cma11g00623 Cma-Chr11:2998384 5.91E-65 transposed
Cma01g00104 Cma-Chr1:479759 Cma11g00623 Cma-Chr11:2998384 1.51E-54 wgd
Cma10g00637 Cma-Chr10:2917011 Cma11g00623 Cma-Chr11:2998384 1.01E-130 wgd
Cma11g00623 Cma-Chr11:2998384 Cma08g00715 Cma-Chr8:4343801 4.04E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00623 - - csv:101222168 1914.04