Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00638 ATGGCTCGCCTTGTCGTTCACAATGACCCTGCAATTTTCAACTCTGCCTCTTCCTCTTCCTCCTCATTCTCCTCCTCCTCCTCCTCCTCGTCGGTTGAGATCGATCAGGCAGGGGCGGCGATTGCGATTCACTCGAACCGGAAACGGGCGAAGCGGCCCAGGGAAACTAGCAATGGAAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGAAAATGGGTTTCCGAAATTCGCGAGCCCCGAAAGAAGAGCAGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTCGCCGCTTTAACTATCAAAGGCAACTCCGCCATTCTCAACTTTCCCCAACTTGCCCATCAGTTCCCTCGACCCGCTTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCTGCCTCCATGGAACTCCCCACCCCTCCCCCGCCGACGCCCTCCTCATCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCGGTTTGTGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCTAGCTTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCATACCCATGGTACAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTTAATGGCGGATTATACACACACTTGGATTCCAACTACCACACCCTTCGAAACTTTCTCGTGGCCACATTAA 798 54.89 MARLVVHNDPAIFNSASSSSSSFSSSSSSSSVEIDQAGAAIAIHSNRKRAKRPRETSNGNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPQLAHQFPRPASNSPRDVQAAAAKAASMELPTPPPPTPSSSSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLYSYPWYNRVSNVEEEEEEDYRLFGDQILMADYTHTWIPTTTPFETFSWPH 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3083677 3084474 + CmaCh11G006380.1 Cma11g00638 303147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00638 265 MobiDBLite consensus disorder prediction 162 179 - -
Cma11g00638 265 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Cma11g00638 265 MobiDBLite consensus disorder prediction 129 183 - -
Cma11g00638 265 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Cma11g00638 265 MobiDBLite consensus disorder prediction 42 66 - -
Cma11g00638 265 CDD AP2 66 122 IPR001471 GO:0003700|GO:0006355
Cma11g00638 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 244 - -
Cma11g00638 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00638 Cma-Chr11:3083677 Cma12g00253 Cma-Chr12:1285060 5.86E-56 dispersed
Cma01g00099 Cma-Chr1:455264 Cma11g00638 Cma-Chr11:3083677 3.00E-42 wgd
Cma10g00659 Cma-Chr10:2980345 Cma11g00638 Cma-Chr11:3083677 9.61E-99 wgd
Cma11g00638 Cma-Chr11:3083677 Cma12g01265 Cma-Chr12:9873149 2.17E-63 wgd
Cma11g00638 Cma-Chr11:3083677 Cma05g01358 Cma-Chr5:10234374 3.70E-73 wgd
Cma11g00638 Cma-Chr11:3083677 Cma08g00723 Cma-Chr8:4366261 3.46E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35827 PF00847 AP2 2.40E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00638 K09286 - csv:101219745 311.997