Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00638 | ATGGCTCGCCTTGTCGTTCACAATGACCCTGCAATTTTCAACTCTGCCTCTTCCTCTTCCTCCTCATTCTCCTCCTCCTCCTCCTCCTCGTCGGTTGAGATCGATCAGGCAGGGGCGGCGATTGCGATTCACTCGAACCGGAAACGGGCGAAGCGGCCCAGGGAAACTAGCAATGGAAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGAAAATGGGTTTCCGAAATTCGCGAGCCCCGAAAGAAGAGCAGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTCGCCGCTTTAACTATCAAAGGCAACTCCGCCATTCTCAACTTTCCCCAACTTGCCCATCAGTTCCCTCGACCCGCTTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCTGCCTCCATGGAACTCCCCACCCCTCCCCCGCCGACGCCCTCCTCATCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCGGTTTGTGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCTAGCTTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCATACCCATGGTACAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTTAATGGCGGATTATACACACACTTGGATTCCAACTACCACACCCTTCGAAACTTTCTCGTGGCCACATTAA | 798 | 54.89 | MARLVVHNDPAIFNSASSSSSSFSSSSSSSSVEIDQAGAAIAIHSNRKRAKRPRETSNGNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPQLAHQFPRPASNSPRDVQAAAAKAASMELPTPPPPTPSSSSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLYSYPWYNRVSNVEEEEEEDYRLFGDQILMADYTHTWIPTTTPFETFSWPH | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3083677 | 3084474 | + | CmaCh11G006380.1 | Cma11g00638 | 303147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00638 | 265 | MobiDBLite | consensus disorder prediction | 162 | 179 | - | - | |
Cma11g00638 | 265 | Pfam | AP2 domain | 64 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | PRINTS | Ethylene responsive element binding protein signature | 88 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | SMART | rav1_2 | 65 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | Gene3D | AP2/ERF domain | 65 | 123 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | MobiDBLite | consensus disorder prediction | 129 | 183 | - | - | |
Cma11g00638 | 265 | SUPERFAMILY | DNA-binding domain | 65 | 123 | IPR016177 | GO:0003677 | |
Cma11g00638 | 265 | MobiDBLite | consensus disorder prediction | 42 | 66 | - | - | |
Cma11g00638 | 265 | CDD | AP2 | 66 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00638 | 265 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 244 | - | - | |
Cma11g00638 | 265 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 16 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00638 | Cma-Chr11:3083677 | Cma12g00253 | Cma-Chr12:1285060 | 5.86E-56 | dispersed | |
Cma01g00099 | Cma-Chr1:455264 | Cma11g00638 | Cma-Chr11:3083677 | 3.00E-42 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma11g00638 | Cma-Chr11:3083677 | 9.61E-99 | wgd | |
Cma11g00638 | Cma-Chr11:3083677 | Cma12g01265 | Cma-Chr12:9873149 | 2.17E-63 | wgd | |
Cma11g00638 | Cma-Chr11:3083677 | Cma05g01358 | Cma-Chr5:10234374 | 3.70E-73 | wgd | |
Cma11g00638 | Cma-Chr11:3083677 | Cma08g00723 | Cma-Chr8:4366261 | 3.46E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35827 | PF00847 | AP2 | 2.40E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00638 | K09286 | - | csv:101219745 | 311.997 |