Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00649 ATGACGACGACGGCGTTTCTTTCTTCCCTTCTCTTTTTTCTCGAAACCATTTCTTTCCTCCTCCTCCTCCTCTGTTCCCACCATGCCAATTCCCAACTCTACCAACAAGAACACTCTGTTTTGCTCCGATTGAACCAGTTCTGGAAAAACCAAGCCCCAATCGCCCATTGGCGGTCTTCAAATGCTTCTCATTGTACATGGCCGGAGATTCAGTGCACTAACAACTCCGTCACTGCTCTGCTTTTCCCTGGCTACAATTTGAACGGAACCTTCCCTCCTTTCCTATGCGATCTCAACAATCTCACCCAACTTGATCTTAACCTCAATTATATCGCCGATGGTTTTCCTACCACTCTGTACAATTGTTCCAAGCTTAATTACCTCCACCTTGCGCAGAATTACTTCGACGGTCCAATTCCCGATGATGTCCACCGCTTGTCTCGCCTCCAATATCTTAATCTCGGCGGCAACAGATTCTCCGGCGAAATTCCGGCATCCATTTCTCGGTTGGCAGAGCTTCGATCCCTTAATCTTTATGTGAACAGATTCAATGGGAGTTACCCATCTGAAATTGGTAACTTGTTGAATCTGGAAGAATTACTGTTGGCTTATAATTCACTTCTGCTACCGGTGGAATTGCCCCCCAGTTTCGCCCAATTGAAGAAATTGAAGTTTATATGGATGACAGATACGAACCTAGTGGGTGAAATTCCTGATTGGATAGGGAATTTGACCGACCTCGAGACGTTGAATTTGTCGGAAAACAATTTGACAGGGAAAATTCCCAGCAGTTTGTTTATGCTGAAGAATCTCAGTTTCGTTTATCTGTTCAAGAACAATCTGTCCGGAGAAATCCCGACTCGGATTGATTCAAAAAAGATTGTAGAATACGACCTATCAGAAAATAATTTGACCGGGGAAATTCCGGCAGCTATCGGCGATCTTCAGCAATTGACGTCTTTGCTTCTGTTTTCAAATCGATTACATGGAGAAATCCCTGAAAGCATCGGACGTCTTCCAAAATTAGATGATGTCAGATTGTTCGATAACAGTTTAACCGGCACGCTGCCGCAGGATTTCGGCCGGAATTTGGTTCTCAGAAGTTTTCAGGTGGGCAACAATAAGCTTACTGGAAGGTTACCGGAGCACTTGTGCTCCGGCGGTAAGCTCGTAGGAGTTACTGCATACGAGAATAATCTTAGTGGGGAACTGCCAGAGTCTCTTGGGAATTGCAGCAGCTTGATGATGATTGATGTTCATAAGAACAACTTTTCTGGGAAAATTCCGGTGGGTCTATGGATGCCTCTTAATTTGACATTTGTAATGATGAGCGACAATTCTTTCACCGGTGAACTCCCTGAGAGATTCTCAACGAATCTTGGGACGTTGGAAATCAGTAACAACAAATTTTCAGGGAAAATCCCATCTGGGTTATTTTCTTTATGGAATTTGACTGAGTTTCTAGCAAGCAATAATTTATTTACAGGACAAATTCCTGAAGAACTCACTATTCTTTCAAAGTTGAACAAGCTCTGGCTCGATGGAAATCAACTCACCGGAGAGCTTCCACAGAATATCATTTCATGGAGATCATTGAACAATCTTAACCTCAGTCGAAATCGTCTTTCAGGTGTAATTCCGGATGAACTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCAGAGAATCAACTTTCCGGGATGATTCCGACTCAACTAGGAAATTTGAAACTGAATTTCCTCAACCTCTCCTCAAATCTGTTGTCTGGGACAATCCCCTTGGCACTTGAAAACCCTATCTATACCAGAAGCTTTTTGAACAATCCAAATCTTTGTTCAAACAACGCAGTTCTAAATTTGAATAGCTGCAATTTGAGATCTCAGAATTCAAGAACAATTTCATCGCAGCATCTTGCTCTGATCGTGAGCTTGGGCGTTATACTGTTCATACTCTTTATACTTGCTGCTGTGTTCACAACCAAAATCTACTGGAAAACTGGAAACAGAGAGGATATTGAATGGAAATTGACCTCATTTCAAAGGCTGAATTTCTCGGAGGAAAATCTTTTATCTGGGTTATCAGAAAATAACGTGATCGGAAGTGGTGGCTCAGGGAAAGTTTACCGGATTCCGGTGAATAATTTGGGCGATACAGTGGCCGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTGGAGAAAGAATTCATGGCGGAAGTGAAGGTTTTGAGTTCGATTCGCCATAACAACATAATCAAACTCCTCTGCTTCGTTTCCAGTGAAACTTCTCGGCTTCTCGTTTATGAGTACATGGAGAAGCAAAGCTTGGACAAATGGCTGCACAAGAGGAACTCGCCGCCGAGAATTACAGGTTCGGAGCCTGATTGCGGTGTCCCCCTCGATTGGCCGACGAGATTTCAAATAGCGGTGGGGGCAGCACAAGGCCTCTGTTATATGCACCATGAATGCTCACCTCCGGTAATTCATAGAGACTTGAAATCCAGCAATATCTTACTCGATTCAGAACTCAATGCCAAAATAGCAGATTTTGGGTTAGCCAAGTTGCTGGTAAAACAGGGAGAAGCGGCTTCAGTTTCCGCCGTGGCGGGCTCTTTTGGATACATAGCTCCAGAGTATGCTCAAACACCGAGAATTAATGAGAAGATCGACGTGTTTAGCTTTGGGGTTATTCTTTTAGAGTTGGCGACTGGAAAGGATGCCCTCAATGGCGATGAGGACTCGTCTCTGGCGGAGTGGGCTTGGGAGTGCATTCAACAGGGCAAGCGAATAGCCGATGTACTGGATGAAGATGTGAAGGAGCCGCATTATCTTGATGAGATGTGCAGTGTTTTCAAGCTTGGAGTGATTTGCACTTCTAGTTTGCCAACTAACCGGCCAACCATGCACCAGGCTTTGGAAGTCTTGATCCGTAGTCGGACCTCGACACCCCAAAATCATGGAGAGAAGAAACTCGGATCGTGA 2991 44.2 MTTTAFLSSLLFFLETISFLLLLLCSHHANSQLYQQEHSVLLRLNQFWKNQAPIAHWRSSNASHCTWPEIQCTNNSVTALLFPGYNLNGTFPPFLCDLNNLTQLDLNLNYIADGFPTTLYNCSKLNYLHLAQNYFDGPIPDDVHRLSRLQYLNLGGNRFSGEIPASISRLAELRSLNLYVNRFNGSYPSEIGNLLNLEELLLAYNSLLLPVELPPSFAQLKKLKFIWMTDTNLVGEIPDWIGNLTDLETLNLSENNLTGKIPSSLFMLKNLSFVYLFKNNLSGEIPTRIDSKKIVEYDLSENNLTGEIPAAIGDLQQLTSLLLFSNRLHGEIPESIGRLPKLDDVRLFDNSLTGTLPQDFGRNLVLRSFQVGNNKLTGRLPEHLCSGGKLVGVTAYENNLSGELPESLGNCSSLMMIDVHKNNFSGKIPVGLWMPLNLTFVMMSDNSFTGELPERFSTNLGTLEISNNKFSGKIPSGLFSLWNLTEFLASNNLFTGQIPEELTILSKLNKLWLDGNQLTGELPQNIISWRSLNNLNLSRNRLSGVIPDELGGLPSLTDLDLSENQLSGMIPTQLGNLKLNFLNLSSNLLSGTIPLALENPIYTRSFLNNPNLCSNNAVLNLNSCNLRSQNSRTISSQHLALIVSLGVILFILFILAAVFTTKIYWKTGNREDIEWKLTSFQRLNFSEENLLSGLSENNVIGSGGSGKVYRIPVNNLGDTVAVKKIWNNRKSDHKLEKEFMAEVKVLSSIRHNNIIKLLCFVSSETSRLLVYEYMEKQSLDKWLHKRNSPPRITGSEPDCGVPLDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSELNAKIADFGLAKLLVKQGEAASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELATGKDALNGDEDSSLAEWAWECIQQGKRIADVLDEDVKEPHYLDEMCSVFKLGVICTSSLPTNRPTMHQALEVLIRSRTSTPQNHGEKKLGS 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3152675 3156660 + CmaCh11G006490.1 Cma11g00649 303158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00649 996 SMART serkin_6 694 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00649 996 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 986 - -
Cma11g00649 996 SMART LRR_typ_2 315 339 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 244 268 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 553 577 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 98 122 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 505 529 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 194 219 IPR003591 -
Cma11g00649 996 SMART LRR_typ_2 146 170 IPR003591 -
Cma11g00649 996 Gene3D Ribonuclease Inhibitor 34 185 IPR032675 -
Cma11g00649 996 Gene3D Ribonuclease Inhibitor 186 291 IPR032675 -
Cma11g00649 996 Pfam Protein kinase domain 696 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00649 996 ProSitePatterns Protein kinases ATP-binding region signature. 700 724 IPR017441 GO:0005524
Cma11g00649 996 Gene3D Ribonuclease Inhibitor 292 460 IPR032675 -
Cma11g00649 996 Pfam Leucine rich repeat 530 589 IPR001611 GO:0005515
Cma11g00649 996 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Cma11g00649 996 Gene3D Transferase(Phosphotransferase) domain 1 774 994 - -
Cma11g00649 996 Gene3D Phosphorylase Kinase; domain 1 676 773 - -
Cma11g00649 996 PRINTS Leucine-rich repeat signature 532 545 - -
Cma11g00649 996 PRINTS Leucine-rich repeat signature 553 566 - -
Cma11g00649 996 SUPERFAMILY RNI-like 295 646 - -
Cma11g00649 996 SUPERFAMILY L domain-like 57 381 - -
Cma11g00649 996 SUPERFAMILY Protein kinase-like (PK-like) 685 978 IPR011009 -
Cma11g00649 996 Gene3D Ribonuclease Inhibitor 529 611 IPR032675 -
Cma11g00649 996 Gene3D Ribonuclease Inhibitor 461 528 IPR032675 -
Cma11g00649 996 ProSiteProfiles Leucine-rich repeat profile. 246 268 IPR001611 GO:0005515
Cma11g00649 996 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 17 986 - -
Cma11g00649 996 ProSiteProfiles Protein kinase domain profile. 694 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00649 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00669 Cma11g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00649 Cma-Chr11:3152675 Cma12g00237 Cma-Chr12:1182722 0 dispersed
Cma10g00669 Cma-Chr10:3044952 Cma11g00649 Cma-Chr11:3152675 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68890 PF00069 Pkinase 1.00E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00649 - - csv:101214935 1497.26