Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00652 ATGGGGAGAGCCACGAGATGGCTGAAGAACTTGTTTGGGATTAAGAAAGAAAAACAACCCACCACCGAAAATTCCACCTCCGCCTTCAACAAGGATAACAACCCCACTTCTAATTTCGTCGGAGACGCCCAACTCTGCAACAATCCGGCTACAATACCGCCCAATTTATCCGCCGCGGAGGCCGCTTGGCTCAAATCCTTCTACTCTGAAACAGAGAAGGAACAGAGCAAGCACGCTATAGCAGTCGCTGCAGCCACTGCTGCTGCTGCTGACGCTGCGGTTGCTGCAGCACAAGCTGCCGTGGCTGTCGTCCGGCTCACTAGCCATGGGCGAGGTACTATGTTCGGCGGCGGCCGAGAGAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTTTCTGGCGAGAAAAGCACTGAGAGCGCTTAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTGATTCGTAAACAAGCAACGGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGGAGTGAGCACACAGCTTCAGTACACAGCAGAAGGCTTTCATCTTCTTTTGACAACACACCATTTACAGCGCTTGAAGAAAGCCCCAAAATCGTTGAAATGGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCAGAATTTGGCGACGACCCATTTCACCAAACGTTGTCGTCTCCACTTCCCTGTCGAACTCCGTCGCGTTTGCAGATTCCTGATTGCCGGCACGATTCTGACTGGGGTCTCACTGGCGACGAGTGCCGCTATATCTCGACAGCGCAGAGCACTCCACGATTCGTCAGCTCCGGCAGATCCAATGGCCCTCCGACGCCAGCGAAGAGCATGTGTGCTGATAATTTCTTCAGAGGGTACTTGAATTTCCCAAATTACATGGCGAATACTCAATCATTTATGGCGAAATTGAGGTCCCAGAGTGCTCCGAAACAGAGGCCGGAGCCAGGCTCGAAGAAGAGGCTTTCGTTGAATGAATTAATGGAATCGAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGGTCTTGTTCGCAGGTACAAGAAGCCATTAATTTCAAGAATGCTGTGATGAGCAAACTGGATAGACCATCGGAATTCAACAACTTGCAGAGAAGATCATGA 1203 51.04 MGRATRWLKNLFGIKKEKQPTTENSTSAFNKDNNPTSNFVGDAQLCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGFLARKALRALKGLVKLQALVRGYLIRKQATATLHSMQALIRAQATVRSQRTRRSEHTASVHSRRLSSSFDNTPFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRHDSDWGLTGDECRYISTAQSTPRFVSSGRSNGPPTPAKSMCADNFFRGYLNFPNYMANTQSFMAKLRSQSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3171146 3172705 + CmaCh11G006520.1 Cma11g00652 303161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00652 400 Pfam Protein of unknown function (DUF4005) 289 365 IPR025064 -
Cma11g00652 400 Gene3D - 117 171 - -
Cma11g00652 400 MobiDBLite consensus disorder prediction 219 251 - -
Cma11g00652 400 PANTHER IQ-DOMAIN 5-RELATED 186 391 - -
Cma11g00652 400 PANTHER IQ-DOMAIN 5-RELATED 1 185 - -
Cma11g00652 400 PANTHER - 186 391 - -
Cma11g00652 400 PANTHER - 1 185 - -
Cma11g00652 400 MobiDBLite consensus disorder prediction 226 251 - -
Cma11g00652 400 MobiDBLite consensus disorder prediction 180 200 - -
Cma11g00652 400 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Cma11g00652 400 SMART iq_5 119 141 IPR000048 GO:0005515
Cma11g00652 400 SMART iq_5 142 163 IPR000048 GO:0005515
Cma11g00652 400 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Cma11g00652 400 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515
Cma11g00652 400 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00673 Cma11g00652 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01130 Cma-Chr8:6984266 Cma11g00652 Cma-Chr11:3171146 9.00E-33 dispersed
Cma11g00652 Cma-Chr11:3171146 Cma14g01742 Cma-Chr14:12751382 3.04E-39 dispersed
Cma01g00093 Cma-Chr1:425355 Cma11g00652 Cma-Chr11:3171146 1.32E-71 wgd
Cma10g00673 Cma-Chr10:3057232 Cma11g00652 Cma-Chr11:3171146 0 wgd
Cma11g00652 Cma-Chr11:3171146 Cma14g01288 Cma-Chr14:10183858 4.35E-84 wgd
Cma11g00652 Cma-Chr11:3171146 Cma17g00759 Cma-Chr17:6124935 8.75E-103 wgd
Cma11g00652 Cma-Chr11:3171146 Cma08g00741 Cma-Chr8:4454707 6.34E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00652 - - cmax:111495188 750.74