Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00653 | ATGTCAAAACTTCAGCCCCCTTTCGCGTTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGCTCACTCAAACGCACTGCCACACTAAAGGGATCAGACCCAAGAAATCGCCCAGAACCATTCTTCCCAAGAATTCCACCAAAACCCAATTCTCAGAACAGCAATTTATGAAATGGGTCAAATTCGTCGGCAGCCTCAAACACTCAGTTTTCAGAACGGCGAAGAATAAGCTTTTTCCTTCTTACACACTCCACGTCGCTAAAAAACCCGCCGCCGGCGACTTTACGTCGATCCAAGACGCCATCGATTCCCTACCCTTCATCAATTTGATCAGAGTTGTGATCAAGGTTCATGCAGGAGTATACAAAGAAAAAGTAATCATACCACCGTTCAAATCGTTCATAACAATCGAAGGAGCGGGGGCAGCCAAAACGATCGTTCAATGGGGGGACACAGCACAAACACCAGGCCCAAAGGGGCAGCCGTTGGGGACCTATAACTCCGCAACATTCGCAGTAAATTCCCTTTATTTCATAGCCAAAAACATCACATTCAAGAACACCACCCCTGTACCCCCACCAGGAGCGATGGGAAAGCAAGCGGTGGCGTTCAGAATCTCAGGGGACACGGCGGCATTCTACGGATGCAGATTCTTAGGAGCTCAGGACACACTGTACGACCATCTGGGTCGGCATTATTACAAGGATTGTTACATCGAAGGGTCAGTGGACTTCATCTTTGGAAATGGGTTGTCTCTGTTTGAGGGGTGTCACGTGCACGCAATAGCGAGGTACACAGGGGCGTTGACAGCGCAGGGGAGAAGCAGCCTGCTGGAGGACACAGGGTTCTCATTCGTAAACTGTAAGGTCACGGGGTCTGGAGCGCTGTACTTGGGAAGGGCATGGGGGCCCTTCTCTAGGGTCGTCTTCGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTACAATTGGGGCGATCCCAATCGCGAAATGACTGTGTTCTACGGGCAATACAAATGTACAGGAGAAGGAGGTAGGTTTGCAGGCAGAGTTTCATGGTCCAGAGAGCTTACTGACGAGGAAGCCAAGCCTTTTATTTCGCTTAGCTTCATCGATGGCTCTGAATGGATTAAAATTTAA | 1149 | 48.74 | MSKLQPPFAFSLLLLLLLLLLLTQTHCHTKGIRPKKSPRTILPKNSTKTQFSEQQFMKWVKFVGSLKHSVFRTAKNKLFPSYTLHVAKKPAAGDFTSIQDAIDSLPFINLIRVVIKVHAGVYKEKVIIPPFKSFITIEGAGAAKTIVQWGDTAQTPGPKGQPLGTYNSATFAVNSLYFIAKNITFKNTTPVPPPGAMGKQAVAFRISGDTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIARYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGEGGRFAGRVSWSRELTDEEAKPFISLSFIDGSEWIKI | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3173508 | 3175329 | - | CmaCh11G006530.1 | Cma11g00653 | 303162 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00653 | 382 | Pfam | Pectinesterase | 90 | 376 | IPR000070 | GO:0030599|GO:0042545 | |
| Cma11g00653 | 382 | ProSitePatterns | Pectinesterase signature 2. | 239 | 248 | IPR033131 | - | |
| Cma11g00653 | 382 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 6 | 381 | - | - | |
| Cma11g00653 | 382 | Gene3D | - | 80 | 382 | IPR012334 | - | |
| Cma11g00653 | 382 | SUPERFAMILY | Pectin lyase-like | 79 | 381 | IPR011050 | - | |
| Cma11g00653 | 382 | PANTHER | PECTINESTERASE | 6 | 381 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00675 | Cma11g00653 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00653 | Cma-Chr11:3173508 | Cma15g01122 | Cma-Chr15:7148399 | 1.70E-108 | dispersed | |
| Cma04g00770 | Cma-Chr4:3911515 | Cma11g00653 | Cma-Chr11:3173508 | 1.06E-171 | transposed | |
| Cma10g00790 | Cma-Chr10:3634710 | Cma11g00653 | Cma-Chr11:3173508 | 1.15E-89 | transposed | |
| Cma15g00251 | Cma-Chr15:1210368 | Cma11g00653 | Cma-Chr11:3173508 | 1.12E-90 | transposed | |
| Cma20g01082 | Cma-Chr20:8314197 | Cma11g00653 | Cma-Chr11:3173508 | 3.80E-75 | transposed | |
| Cma10g00675 | Cma-Chr10:3060694 | Cma11g00653 | Cma-Chr11:3173508 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00653 | K01051 | - | csv:101215894 | 694.115 |