Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00671 ATGGTGATCGGCCAACGCCACCGACCTGGTCCGTTGCTTCACATCACTCCATTGATGATACCAGATGAACCTGCGAACGAGACGCGGCTTCCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGACAATGCTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTAGCGGCATTTCAGCAATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTGATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTCGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAGAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTGCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGTCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGACGCGAATTCGCCTGACTCATATGATGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAATCGCTTCCGTTTCTGTCTTCTCCGTTGTCTGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCCATATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCAGCCTCCAACAGGTCCAGGAGTTGGGTTGCTAGACTTCACGGACCATGGATTCGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA 1152 52.26 MVIGQRHRPGPLLHITPLMIPDEPANETRLPFPLSGISVSSDDNANGGDYSPYHLQEVLAAFQQYLPSTSESEIESDLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPARYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPRDANSPDSYDESPLRQCLDGTCAKSLPFLSSPLSVSPSATPVDSPPISPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDFTDHGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3249244 3250395 - CmaCh11G006710.1 Cma11g00671 303180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00671 383 Gene3D - 136 200 - -
Cma11g00671 383 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Cma11g00671 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Cma11g00671 383 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 38 383 - -
Cma11g00671 383 PANTHER UNKEMPT FAMILY MEMBER 38 383 IPR045234 -
Cma11g00671 383 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Cma11g00671 383 SMART c3hfinal6 136 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01767 Cma-Chr1:11875855 Cma11g00671 Cma-Chr11:3249244 2.60E-97 dispersed
Cma11g00671 Cma-Chr11:3249244 Cma12g01284 Cma-Chr12:9983593 2.08E-153 dispersed
Cma10g00690 Cma-Chr10:3123164 Cma11g00671 Cma-Chr11:3249244 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35830 PF00642 zf-CCCH 4.40E-06 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00671 - - csv:101204432 654.44