Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00709 ATGGAGAATCATCAGGAGGTTGAAAGCGAGGAAGAAGATGGAGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAATTGGAGTCGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCGGCTAAACAGTACATTGAAAATCATTACAAGGCTCAAAAAAAACATATTCAAGAACGCAAAGAGAGGCGTTCCTTGCTAGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCACAAGGAGACTCAATACATTCGGCTCAAAAGGCATAAGATTTGTGTTGAGGATTTTGACCTTTTGACAATTATTGGGCGAGGTGCATTTGGGGAGGTTAGACTTTGTCGGGAGAAGAAAACAGGTAACATATATGCTATGAAGAAGCTGAAGAAATTAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGCAAGTCACTACATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTAATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTAATTAGGGAAGAAACTTTGACAGAAACCGTAGCCAGATTTTACATCGCTCAAAGCGTTCTAGCTATCGAGTCGATTCATACACATAACTACATTCACAGAGACATAAAACCGGACAACCTTCTTTTGGACCAAAGGGGTCATATGAAACTGTCTGATTTTGGTCTTTGCAAACCTCTTGACTGTTCAAATCTGTCTTCTATAAATGAGAATGAAGTCCTTGACGACGATAACTTGCACGACACGGTGGATGTTGATGCAAGTGTTCCGGGGAAGAAAAGTGGGAGGCGTTGGAAGAGCCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGCATTCTCCACGGTTGGCACTCCAGACTACATAGCTCCAGAAGTGTTGCTTAAAAAAGGATACGGCGTTGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGGTTATCACCTGAAGCAAAGGACCTGATTAGTAGGCTGCTTTGTGATGCAGACCATAGGCTTGGGACAGGAGACGCCGACCAAATAAAGACTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTATGATATAGATGCAGCATTTAAGCCTGAGGTCAATGGGGAACTTGATACGCAGAACTTTATGCAATTTGATGAGGTCGATCCACCGCCAACGAGAACGGGATCCGGACCAATAAGGAAGATGTTATTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGATGCTGTCAAAGGGCTACGCCATTCATTTGATTTGAACTCAAGCACCAGCCCAATTCGGACTTCGTCAGTTGACTCAACACAAAGTGACTCGGCATTGAACTACTCAACGATGTACTCAGGCGGTGATAGGGAAGCCATATTGGGATCATCTGGGGATGCATTGTCACAAGGCCTTGTGAGTGCCCAGGAATTTTCCAAACCCTTGAATGCCCCGGATCGTTGTAGCTTCAATCGAGCGCGAATATCAACGATTTGTTTCGGATTGGAAGTTGAGGTAAACCATCTTTCTGTTTCGAAGCATGGGTTAAAAGATCCTTGCTGTATGTTACTTTGCTTTCTTGGGCTATGGTATGGATGA 1806 42.97 MENHQEVESEEEDGVVEEEEEEEEEEEIGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSLLERKLASSDVSEEEQINLLKDLEHKETQYIRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKLEMLSRGQVEHVRAERNLLAEVASHYIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHTHNYIHRDIKPDNLLLDQRGHMKLSDFGLCKPLDCSNLSSINENEVLDDDNLHDTVDVDASVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDADHRLGTGDADQIKTHPWFKDTEWDKLYDIDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFDAVKGLRHSFDLNSSTSPIRTSSVDSTQSDSALNYSTMYSGGDREAILGSSGDALSQGLVSAQEFSKPLNAPDRCSFNRARISTICFGLEVEVNHLSVSKHGLKDPCCMLLCFLGLWYG 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3453691 3462993 + CmaCh11G007090.1 Cma11g00709 303218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00709 601 SUPERFAMILY Protein kinase-like (PK-like) 91 465 IPR011009 -
Cma11g00709 601 Gene3D Phosphorylase Kinase; domain 1 107 192 - -
Cma11g00709 601 Gene3D Phosphorylase Kinase; domain 1 435 445 - -
Cma11g00709 601 Gene3D Transferase(Phosphotransferase) domain 1 193 258 - -
Cma11g00709 601 Gene3D Transferase(Phosphotransferase) domain 1 315 434 - -
Cma11g00709 601 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 520 - -
Cma11g00709 601 MobiDBLite consensus disorder prediction 1 30 - -
Cma11g00709 601 Coils Coil 7 27 - -
Cma11g00709 601 ProSiteProfiles Protein kinase domain profile. 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00709 601 Pfam Protein kinase domain 111 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00709 601 Pfam Protein kinase domain 309 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00709 601 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma11g00709 601 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Cma11g00709 601 SMART serkin_6 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00709 601 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma11g00709 601 CDD STKc_NDR_like 107 480 - -
Cma11g00709 601 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma11g00709 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Cma11g00709 601 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 22 520 - -
Cma11g00709 601 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00738 Cma11g00709 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00709 Cma-Chr11:3453691 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma01g01718 Cma-Chr1:11666023 Cma11g00709 Cma-Chr11:3453691 0 wgd
Cma10g00738 Cma-Chr10:3347570 Cma11g00709 Cma-Chr11:3453691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68894 PF00069 Pkinase 1.20E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00709 K08790 - csv:101208238 924.85