Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00720 ATGGCGGATAAGGAAGAAGCAAAACAAGTTGTTCTACAGATTTTGGATTGTGAAGATGGAGGAGTTGGTGCGAGTAAAGATCTCAGTAAAATCTCTGTTGCAAAATTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGAAATCTGTGGTTGGGAGCTCTTCTTCACACGAGATTTCTAGAATGAATCCCTATAAACCTCCCAAAATTCCGGCGGAATCAGCAGTTCGGCGACCATCGTTTGCTCGTTCTTCGTTTTCAAAGCCGAAATCAAGGCTAGTTGAGCCACCTTGTCCTCATGGTGTGAATTTGGCAGAAGAAACGTTTGCAGAAAAATCAATATCTGGTTCACCATTCTGTAGCTCTACGAAGATGGACTCCCCAGCTAGAATAACTGCTGTGACTAGTCCTAGAGAAGCTTTGAAATCAGTCCCAACAACTCCTAGAACACCATTTACTGGAAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGACAAAAACCATTTTAATTGAATGGTTTTCATTTTTGTGCTTGACGGGGTGTTTGATTGCTACCTTAACTGTAGACAAATTGGCAACGAAAGAGATCTGGGAATTAAGGTTGTGGAAATGCAAGAGATCTAAGAAAGGCCATGCGATTCTGAATTATGTTACTCGAGCTCTTGGTGGTTCTCTCATTGGAGCAGCAATATGGCTGGTGAAAACTTTGCTGGTGAAGATCCTAGCTGCTTCTTTTCAATGCACTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAGTATATACTGCGCACCCTATCAGGACCTCCACTGATGGAGATGGCTAAGGGAATTGGGAGAACAGCAGGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGTAAGGGACGGTGGGAAGGAAAGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCCATGTTATAAGAAGTTCAGGGCTATCCACCATATCTAATACAATAGAGAATTTTAGAGAGGAAGAACTTGAACAAAAAGATAAGGAGATTCACAGTGAATGGGAAGCAAGAGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTACATTGATGAAGATGATCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATATGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATCAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTACATCGAACGCAAGTCGCTAGCCCACTCGTTGAATGACACGAAGACTGCAATAGAGGAGCTAAGCAAGCTTGCTTCTGCAACTGTAGTGATTGTTATTATCGTTGAATGGTTACTTATGATGGGTTTGTTGACGACACAAATACTGGTCTTCTTTTCATCACAGCTTCTGCTGGTTGTCTTCATGTTCGGTAACACTGCCAGAACGGTATTTGAAGGCATCATATTCGTATTTGTGATGCACCCATTTGATGTCGGGGATCGTTGCGTTGTAGATGGTGTGCAGTTGATCGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATGTGACAATGAGAAGATCTTCTATCCGAACTCTGTTCTTGCCACAAAACCCATCAGTAACTTCTACAGAAGCCCGGAAATGGGCGATTCTATCGAATTTTCGGTCGACTTTTCCACATCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATAGAAAGCAAACCTCAGTTCTGGCGCCCGAACCACAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGATTACATGTTAATCACACCATAAACTTTCAAAACTATGGCGACAAGAGCAGTCGCAGGTCGGAACTAGTCTTGGAGCTGAAGAAAGCTTTCGAGGATCTCGGCATCAAGTATCATCTCCTAGCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCTTATGGTTCCACCTTCCCAGAGATGA 2103 42.08 MADKEEAKQVVLQILDCEDGGVGASKDLSKISVAKFPDFELKETRSFRCTIPKSVVGSSSSHEISRMNPYKPPKIPAESAVRRPSFARSSFSKPKSRLVEPPCPHGVNLAEETFAEKSISGSPFCSSTKMDSPARITAVTSPREALKSVPTTPRTPFTGNEEEDDEEVYRTAELKVKERSGKKLTKTILIEWFSFLCLTGCLIATLTVDKLATKEIWELRLWKCKRSKKGHAILNYVTRALGGSLIGAAIWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAKGIGRTAGTGQLSFRHLKKVRDGGKERKEEVIDVDKLKKMKQEKISAWTMRGLIHVIRSSGLSTISNTIENFREEELEQKDKEIHSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEVDNMLPLFEGAVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELSKLASATVVIVIIVEWLLMMGLLTTQILVFFSSQLLLVVFMFGNTARTVFEGIIFVFVMHPFDVGDRCVVDGVQLIVEEMNILTTIFLRCDNEKIFYPNSVLATKPISNFYRSPEMGDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLHVNHTINFQNYGDKSSRRSELVLELKKAFEDLGIKYHLLAQEVQLNYVSSAALMVPPSQR 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3511256 3513982 + CmaCh11G007200.1 Cma11g00720 303229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00720 700 Gene3D - 529 578 IPR023408 -
Cma11g00720 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 224 691 IPR016688 -
Cma11g00720 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 224 691 - -
Cma11g00720 700 MobiDBLite consensus disorder prediction 141 164 - -
Cma11g00720 700 Pfam Mechanosensitive ion channel 470 675 IPR006685 GO:0016020|GO:0055085
Cma11g00720 700 MobiDBLite consensus disorder prediction 60 82 - -
Cma11g00720 700 SUPERFAMILY Sm-like ribonucleoproteins 519 578 IPR010920 -
Cma11g00720 700 PIRSF Memb_At2g17000 223 699 IPR016688 -
Cma11g00720 700 PIRSF Memb_At2g17000 34 225 IPR016688 -
Cma11g00720 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 224 - -
Cma11g00720 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 224 IPR016688 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00752 Cma11g00720 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00720 Cma-Chr11:3511256 Cma17g00069 Cma-Chr17:327028 3.84E-161 dispersed
Cma01g01705 Cma-Chr1:11619565 Cma11g00720 Cma-Chr11:3511256 1.13E-172 wgd
Cma10g00752 Cma-Chr10:3429798 Cma11g00720 Cma-Chr11:3511256 3.92E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00720 K22048 - csv:101209209 816.994