Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00725 | ATGTGCACCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCCGGCATTCCTATACCTCCAGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTTCTCCCCCACCATCCTCAACATGTAGGGTGGAACTATTTGCAAATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTATCCAGATTCGAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACGACAGCAACAAATGATATTAACCGCCTTTCAAATCCAGCGTTTTCTTCCCTAACCAACAATTCATCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCATATCACCCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGGACACTTATGGGCTAAAAGAGAAAGTAGATGAGTATGCCTTCTTCTCGCAAGAACCATCTGAAACTGCTGCAAGAGCCGATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAACTGCTCTTCTTTGCAGAATGATCAGTCCTGCTATCAGCTTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGAGGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGCTCTGA | 852 | 44.48 | MCTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLLPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINRLSNPAFSSLTNNSSLLSYRPFPAHQISSTSNGNGISPQDTNTLLLLESGSYSDRNPDYRSRDTYGLKEKVDEYAFFSQEPSETAARADSLQLTPLTMSCSSLYPKQNCSSLQNDQSCYQLHQSLTDPLKQQKREESQKTVHRFFDEWPPKEL | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3543552 | 3544955 | - | CmaCh11G007250.1 | Cma11g00725 | 303234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00725 | 283 | Pfam | WRC | 77 | 118 | IPR014977 | - | |
| Cma11g00725 | 283 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Cma11g00725 | 283 | PANTHER | - | 3 | 169 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 | |
| Cma11g00725 | 283 | MobiDBLite | consensus disorder prediction | 259 | 283 | - | - | |
| Cma11g00725 | 283 | PANTHER | - | 148 | 281 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 | |
| Cma11g00725 | 283 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Cma11g00725 | 283 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Cma11g00725 | 283 | ProSiteProfiles | WRC domain profile. | 76 | 120 | IPR014977 | - | |
| Cma11g00725 | 283 | PANTHER | GROWTH-REGULATING FACTOR 5 | 3 | 169 | - | - | |
| Cma11g00725 | 283 | PANTHER | GROWTH-REGULATING FACTOR 5 | 148 | 281 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g01420 | Cma11g00725 | CCT | |
| Cma05g01420 | Cma11g00725 | ECH | |
| Cma10g00759 | Cma11g00725 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00725 | Cma-Chr11:3543552 | Cma20g00944 | Cma-Chr20:4758947 | 1.74E-51 | dispersed | |
| Cma01g00034 | Cma-Chr1:133440 | Cma11g00725 | Cma-Chr11:3543552 | 7.48E-69 | wgd | |
| Cma10g00759 | Cma-Chr10:3480515 | Cma11g00725 | Cma-Chr11:3543552 | 4.06E-177 | wgd | |
| Cma11g00725 | Cma-Chr11:3543552 | Cma14g01236 | Cma-Chr14:9788235 | 1.09E-66 | wgd | |
| Cma11g00725 | Cma-Chr11:3543552 | Cma05g01420 | Cma-Chr5:10540072 | 1.89E-99 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35833 | PF08879 | WRC | 8.90E-21 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00725 | - | - | cmax:111467370 | 583.178 |