Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00725 ATGTGCACCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCCGGCATTCCTATACCTCCAGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTTCTCCCCCACCATCCTCAACATGTAGGGTGGAACTATTTGCAAATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTATCCAGATTCGAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACGACAGCAACAAATGATATTAACCGCCTTTCAAATCCAGCGTTTTCTTCCCTAACCAACAATTCATCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCATATCACCCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGGACACTTATGGGCTAAAAGAGAAAGTAGATGAGTATGCCTTCTTCTCGCAAGAACCATCTGAAACTGCTGCAAGAGCCGATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAACTGCTCTTCTTTGCAGAATGATCAGTCCTGCTATCAGCTTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGAGGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGCTCTGA 852 44.48 MCTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLLPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINRLSNPAFSSLTNNSSLLSYRPFPAHQISSTSNGNGISPQDTNTLLLLESGSYSDRNPDYRSRDTYGLKEKVDEYAFFSQEPSETAARADSLQLTPLTMSCSSLYPKQNCSSLQNDQSCYQLHQSLTDPLKQQKREESQKTVHRFFDEWPPKEL 283
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 3543552 3544955 - CmaCh11G007250.1 Cma11g00725 303234
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00725 283 Pfam WRC 77 118 IPR014977 -
Cma11g00725 283 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma11g00725 283 PANTHER - 3 169 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma11g00725 283 MobiDBLite consensus disorder prediction 259 283 - -
Cma11g00725 283 PANTHER - 148 281 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma11g00725 283 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma11g00725 283 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma11g00725 283 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cma11g00725 283 PANTHER GROWTH-REGULATING FACTOR 5 3 169 - -
Cma11g00725 283 PANTHER GROWTH-REGULATING FACTOR 5 148 281 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma05g01420 Cma11g00725 CCT
Cma05g01420 Cma11g00725 ECH
Cma10g00759 Cma11g00725 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00725 Cma-Chr11:3543552 Cma20g00944 Cma-Chr20:4758947 1.74E-51 dispersed
Cma01g00034 Cma-Chr1:133440 Cma11g00725 Cma-Chr11:3543552 7.48E-69 wgd
Cma10g00759 Cma-Chr10:3480515 Cma11g00725 Cma-Chr11:3543552 4.06E-177 wgd
Cma11g00725 Cma-Chr11:3543552 Cma14g01236 Cma-Chr14:9788235 1.09E-66 wgd
Cma11g00725 Cma-Chr11:3543552 Cma05g01420 Cma-Chr5:10540072 1.89E-99 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35833 PF08879 WRC 8.90E-21 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00725 - - cmax:111467370 583.178