Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00742 | ATGGCTTGCGATCCGAACAATGGCGGTGAAATCGGTGCGGAAAATTCTCTCCAATCCATCTGTTACAAACGTGGATCCTTGCGGCTGCTCGATCAGAGGAAGCTTCCTTTCGAAACTCGTTACCTGGACATCAAGGATTCAAAAGATGGATGGCATGCCATAAGGGATATGGTAGTACGCGGGGCGCCTGCCATAGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAACTGTACAACTTGGACGCTTTTAATGGGAGTCCCAAATATGCAGCTTTGTTCATTGCGGAGAAATTGGAGTACTTAGTCTCCAGTCGGCCAACTGCAGTTAATCTTGGGGACGCTGCTATAAAACTTAAAGAAATTGTATCTCGGGCCGTCGCTATTTCTCCTGATGCCAAGAGTGTCTTCCAAGCATATATTGAGGCTGCTGAAGCAATGCTGGAGGACGACGTTGCTTCAAATAAAGCCATCGGGTCTCTAGCAACGGCTGGATATGGTACTGCCCTGGGTGTAATCCGTGCTCTTCACTCCGCTGATGTGTTAGAAAGGGCATACTGTACCGAAACACGACCCTTCAATCAAGGATCTCGACTCACGGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCGGCTGCTGCCGCCTTGATGAAATCTGGAAGGGTGAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCCGCGAACGGTGACACTGCTAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCACCACAACATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTGTCCCTTTCATCTGGCGAAGAAATCGTTATCGAGGAAAGGTCTCCCAAAGAGTTGTTGAATACCCGTGGAGGGCTTGGCGAGCAAGTCGCTGCTTCTGGCATCGATGTCTGGAACCCCGCTTTTGATGTTACTCCTGCTCGTCTGATCTCGGGAATCATTACAGAAAAGGGAGTCATCACGAAGGTGGGTTCTGAAGATTTCAACATAAAGGAGTTTGTTCAAAAGATTGCAGCAGGCACTCTTGCGCAGGTACACTAG | 1080 | 48.8 | MACDPNNGGEIGAENSLQSICYKRGSLRLLDQRKLPFETRYLDIKDSKDGWHAIRDMVVRGAPAIAIAAALALAAELYNLDAFNGSPKYAALFIAEKLEYLVSSRPTAVNLGDAAIKLKEIVSRAVAISPDAKSVFQAYIEAAEAMLEDDVASNKAIGSLATAGYGTALGVIRALHSADVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKSGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGIDVWNPAFDVTPARLISGIITEKGVITKVGSEDFNIKEFVQKIAAGTLAQVH | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3613186 | 3617305 | - | CmaCh11G007420.1 | Cma11g00742 | 303251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00742 | 359 | Gene3D | - | 181 | 347 | IPR042529 | - | |
| Cma11g00742 | 359 | TIGRFAM | salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase | 158 | 335 | IPR005251 | - | |
| Cma11g00742 | 359 | Pfam | Initiation factor 2 subunit family | 59 | 334 | IPR000649 | GO:0044237 | |
| Cma11g00742 | 359 | Gene3D | - | 160 | 180 | IPR027363 | - | |
| Cma11g00742 | 359 | TIGRFAM | eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins | 44 | 335 | IPR011559 | GO:0044249 | |
| Cma11g00742 | 359 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 16 | 335 | IPR037171 | - | |
| Cma11g00742 | 359 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 348 | - | - | |
| Cma11g00742 | 359 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 17 | 344 | IPR005251 | - | |
| Cma11g00742 | 359 | Gene3D | - | 12 | 159 | IPR027363 | - | |
| Cma11g00742 | 359 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 348 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00776 | Cma11g00742 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00742 | Cma-Chr11:3613186 | Cma15g00822 | Cma-Chr15:4132604 | 5.23E-14 | dispersed | |
| Cma10g00776 | Cma-Chr10:3550931 | Cma11g00742 | Cma-Chr11:3613186 | 3.96E-112 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00742 | K08963 | - | csv:101210526 | 572.778 |