Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00742 ATGGCTTGCGATCCGAACAATGGCGGTGAAATCGGTGCGGAAAATTCTCTCCAATCCATCTGTTACAAACGTGGATCCTTGCGGCTGCTCGATCAGAGGAAGCTTCCTTTCGAAACTCGTTACCTGGACATCAAGGATTCAAAAGATGGATGGCATGCCATAAGGGATATGGTAGTACGCGGGGCGCCTGCCATAGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAACTGTACAACTTGGACGCTTTTAATGGGAGTCCCAAATATGCAGCTTTGTTCATTGCGGAGAAATTGGAGTACTTAGTCTCCAGTCGGCCAACTGCAGTTAATCTTGGGGACGCTGCTATAAAACTTAAAGAAATTGTATCTCGGGCCGTCGCTATTTCTCCTGATGCCAAGAGTGTCTTCCAAGCATATATTGAGGCTGCTGAAGCAATGCTGGAGGACGACGTTGCTTCAAATAAAGCCATCGGGTCTCTAGCAACGGCTGGATATGGTACTGCCCTGGGTGTAATCCGTGCTCTTCACTCCGCTGATGTGTTAGAAAGGGCATACTGTACCGAAACACGACCCTTCAATCAAGGATCTCGACTCACGGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCGGCTGCTGCCGCCTTGATGAAATCTGGAAGGGTGAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCCGCGAACGGTGACACTGCTAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCACCACAACATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTGTCCCTTTCATCTGGCGAAGAAATCGTTATCGAGGAAAGGTCTCCCAAAGAGTTGTTGAATACCCGTGGAGGGCTTGGCGAGCAAGTCGCTGCTTCTGGCATCGATGTCTGGAACCCCGCTTTTGATGTTACTCCTGCTCGTCTGATCTCGGGAATCATTACAGAAAAGGGAGTCATCACGAAGGTGGGTTCTGAAGATTTCAACATAAAGGAGTTTGTTCAAAAGATTGCAGCAGGCACTCTTGCGCAGGTACACTAG 1080 48.8 MACDPNNGGEIGAENSLQSICYKRGSLRLLDQRKLPFETRYLDIKDSKDGWHAIRDMVVRGAPAIAIAAALALAAELYNLDAFNGSPKYAALFIAEKLEYLVSSRPTAVNLGDAAIKLKEIVSRAVAISPDAKSVFQAYIEAAEAMLEDDVASNKAIGSLATAGYGTALGVIRALHSADVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKSGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGIDVWNPAFDVTPARLISGIITEKGVITKVGSEDFNIKEFVQKIAAGTLAQVH 359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 3613186 3617305 - CmaCh11G007420.1 Cma11g00742 303251
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00742 359 Gene3D - 181 347 IPR042529 -
Cma11g00742 359 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 158 335 IPR005251 -
Cma11g00742 359 Pfam Initiation factor 2 subunit family 59 334 IPR000649 GO:0044237
Cma11g00742 359 Gene3D - 160 180 IPR027363 -
Cma11g00742 359 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 44 335 IPR011559 GO:0044249
Cma11g00742 359 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 335 IPR037171 -
Cma11g00742 359 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 348 - -
Cma11g00742 359 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 344 IPR005251 -
Cma11g00742 359 Gene3D - 12 159 IPR027363 -
Cma11g00742 359 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 348 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma10g00776 Cma11g00742 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00742 Cma-Chr11:3613186 Cma15g00822 Cma-Chr15:4132604 5.23E-14 dispersed
Cma10g00776 Cma-Chr10:3550931 Cma11g00742 Cma-Chr11:3613186 3.96E-112 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00742 K08963 - csv:101210526 572.778