Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00746 ATGGCCCTCTCCATTTCTTCCACTGCGCTCTCATCACTCCCAATCAGCAGAGAATCATCCCACAGTCACAGAGCACTCAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTTCTCATCTGAACGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTCGGGTTCGACCCGCTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATCCTCCTCCCCGAATGGTTCGAGAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATATTTTGCAGACCCGACGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTAGAGGGGCGGCGGTGGGCTGACATGGTTAACCCAGGATGCGTAGACGTGGACCTCAAACTACCTCACAAGAAAAAGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAAGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGCTCCGGTGGAATTTGAGCTCAGATTCAGAGATCGGTTACATCCAACATCCGACACAAGTTTCTGTGTTGCTTTCGGTTGAAAGAGTTGAGAGAAGAATCAAAATGGGTACTGCATCAGAAATTGTGGCGAAATTGAATTTGAAACCTCATCCAGAAGGCGGTTTTTACTCTGAAACTTTCAGAGACAAGTCCGTTCATCTCTCCAAATCTCATCTCCCACCGGAGTACAAGGTTGATCGAGAGGTCAGCACGTGCATATACTTTTTGGTGCCGTCTGGATGCATTTCTGCTCTTCATCGGATTCCATGTGCAGAAACTTGGCATTTTTACTCGGGAGAACCTCTTACGATACTGGAGTTGAATGAAGAGGACGGTCGAGTCAAATTGACTTGTCTTGGGTCTGATTTCGTTGGAAGCAATCAATTACTTCAGTATACAGTGCCTCCTAATGTCTGGTTTGGTTCTTTTCCAACCAAGGACTTCAATATTTCTGCAGATGGGACTGTGACTAAAGCTGCTCCAAGGGACTCTGAGAATCACTACTCACTTGTGGGCTGCAGCTGTGCACCCGCTTTCCAGTTTGAGGACTTTGAATTGGCTAAACGTTCTGACCTTGTTTCTCGTTTTCCCGATAGTGTGCCTTTCGTCTCTTTGCTCACGCTAGATGCCTGA 1458 51.92 MALSISSTALSSLPISRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSLRWNLSSDSEIGYIQHPTQVSVLLSVERVERRIKMGTASEIVAKLNLKPHPEGGFYSETFRDKSVHLSKSHLPPEYKVDREVSTCIYFLVPSGCISALHRIPCAETWHFYSGEPLTILELNEEDGRVKLTCLGSDFVGSNQLLQYTVPPNVWFGSFPTKDFNISADGTVTKAAPRDSENHYSLVGCSCAPAFQFEDFELAKRSDLVSRFPDSVPFVSLLTLDA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3627834 3631777 - CmaCh11G007460.1 Cma11g00746 303255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00746 485 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
Cma11g00746 485 Gene3D Jelly Rolls 280 479 IPR014710 -
Cma11g00746 485 Pfam Cupin superfamily (DUF985) 302 461 IPR009327 -
Cma11g00746 485 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 263 - -
Cma11g00746 485 CDD cupin_YML079wp 300 473 IPR009327 -
Cma11g00746 485 SUPERFAMILY RmlC-like cupins 292 482 IPR011051 -
Cma11g00746 485 SUPERFAMILY Chlorophyll a-b binding protein 61 266 - -
Cma11g00746 485 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Cma11g00746 485 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01836 Cma-Chr4:9264652 Cma11g00746 Cma-Chr11:3627834 8.91E-103 dispersed
Cma11g00746 Cma-Chr11:3627834 Cma01g00793 Cma-Chr1:4282436 5.29E-59 dispersed
Cma15g00603 Cma-Chr15:2856967 Cma11g00746 Cma-Chr11:3627834 2.17E-37 dispersed
Cma11g00746 Cma-Chr11:3627834 Cma18g00694 Cma-Chr18:6352027 7.30E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00746 K08908 - csv:101211430 482.256