Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00802 ATGGGTGATCTGGAAACTCAAAGAATTAGAAACATATGTATATTAGCACATGTCGACCATGGCAAAACGACGCTTGCCGACCATCTTATTGCCTCCTCGGGGGGTGGTTTGATCCACCCGAAGATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGAGGGCGATTACTATGAAGAGCTCTTCGATTGGTTTACGGTACAAGGAATACTCCATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGCAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCTGTTTTGCGACAGGCTTGGATTGAGAAGCTTACGCCATGTTTGGTTCTTAATAAGATCGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAGGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCGTACAAGTCTGAGAAATATTTGTCTGATGTGGATTCAATACTTGCAAGCTCTACAGGTGAGGTAAATGATGAGAACCTCGAGTTAATTGAGGATGATGAGGAAGATACATTTCAACCCCAGAAAGGGAATGTTGTGTTTGTGTGTGCGTTAGATGGGTGGGGATTTAGCGTTAATGAGTTCGCTGAGTTTTATGCTTCAAAGCTTGGGGCAAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCTCGGTATTTTAATGCAAAGACGAAGATGATCGTTGGAAAGAAGGCCTTGGCTGGAGGAAGTAAAGCTCGACCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGGGCTGCTCTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTAATGCTATTATGAGTCGTTGGCTTCCTCTTTCAAATGCAATATTATCAATGGTTGTTAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATGTCATTGATGCTGAAGTCGATGTCAATGTGCTAACCGAGGCAGATCTTGTCAAGAAATCCATTGAAACTTGTGATACGAAGCCTGAGGCTCCATTTGTTGCTTTTGTATCCAAGATGTTTGCAGTGCCAGTTAAAATGCTTCCAAGGAGGGACGATCATGGCGGGACTACTAATATTTCATCTGATGATGGTGGCGATGGTGAATCAGACGAGTGTTTCCTCGCATTTGCAAGGATATTTAGTGGGGTTCTTTATTCTGGACAGAGAGTTTTCGTGCTTTCAGCTTTATATGACCCAACAAAAGGGGAATCGATGCAAAAGCACATTCAGGAGGTTGAGCTGCATTCATTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCTGTAAAAGCAGGAAACCTTTTAGCAATTCGTGGTCTTAGCCATCACATACTGAAAAGTGCAACTCTTTCATCCACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCGCCAACCCTGAGGGTTGCACTCGAGCCATCTGATCCTGGAGACATAGGTGCCTTATTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCATCTCGAGGAGAACATGTACTTGCTGCAGCTGGAGAAGTCCATCTTGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCCAGGGTAAGCTTGGAGGTCTCTCCACCTCTTGTATCTTATAAAGAAACAATTGAAGGCGAGGCATCTAGTGTGTCGGATTATTTTAAAGTGTTACCTGCAAGCACAGAGTGTGTCGTTAGGAAAACCCCAAATGGTAGATGTGTTGTCAGAGTGCAGGTACTAAAACTTCCACTTGCTCTAGCTAAAGTACTTGATGAAAATTCTGGTGTTCTGGGCGATATTATTGGCGTCAAGTTGGGGCAAAGCTATAAAAACTTGGAAACCAAGAGATCAACTTTGAGGGAAAATGAGAATCCAGCAGAAACATTAAAGAAACTCATATCAGATGCAGTGTGTAGCAATGTATCGTCGAAGGATGACAAACATAATGCACAGTGGTCAAAGCTTCTTAGGCGAATTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCTAAAGTAAATGATTCTGATTGCTCTGTTCTTATTCGGGGTTCATCTCATGCATCACAGAGACTGGGTTTCGTGGACGGTTCTTCAAATGATGATTTGGATGCTGAAACATCGTCGGTAAGTGATGTTGCTTCTGTAGCATCATCAGAAGGAGCTCAGACATTAAGCATGGAAGCAGCATCTCTTGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCTACATCAGCCGGGCCCTTATGTGATGAACCTCTGTGGGGGTTGGCGTTTATTGTCGAGGCTTCTATTTCTTCATTGCCTGGGAATTCAGATGAGTTCGAACCTCCCTTTCAATCAGAGAATAATACTATCTTTTCCGGGCAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAAAAGAAACCTCGGCTTGTCGAAGCCATGTACTTCTGTGAATTGAACACTCCCACCGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCACGCATATGTACCAGTTTCAGAGAGTTTTGGTTTTGCAGATGAGTTAAGGAGGTGGACTTCAGGAGCTGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCGTTCTTTGTCCCGAAGACGGAAGAAGAAATTGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCCAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCTGTGGAAGAAAAAGTTGTGCAGCATGCAACAAAGCAGAGAACACGTGCTCGAAAAGTATAG 3093 43.68 MGDLETQRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILASSTGEVNDENLELIEDDEEDTFQPQKGNVVFVCALDGWGFSVNEFAEFYASKLGANVSALKKALWGPRYFNAKTKMIVGKKALAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLNAIMSRWLPLSNAILSMVVNCMPDPIAAQSFRISRLLPKRDVIDAEVDVNVLTEADLVKKSIETCDTKPEAPFVAFVSKMFAVPVKMLPRRDDHGGTTNISSDDGGDGESDECFLAFARIFSGVLYSGQRVFVLSALYDPTKGESMQKHIQEVELHSFYLMMGQGLKPVTSVKAGNLLAIRGLSHHILKSATLSSTRNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCIKDLKERFARVSLEVSPPLVSYKETIEGEASSVSDYFKVLPASTECVVRKTPNGRCVVRVQVLKLPLALAKVLDENSGVLGDIIGVKLGQSYKNLETKRSTLRENENPAETLKKLISDAVCSNVSSKDDKHNAQWSKLLRRIWALGPQQIGPNILINPDPKVNDSDCSVLIRGSSHASQRLGFVDGSSNDDLDAETSSVSDVASVASSEGAQTLSMEAASLENSVLSGFQLATSAGPLCDEPLWGLAFIVEASISSLPGNSDEFEPPFQSENNTIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTRARKV 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3917130 3920222 + CmaCh11G008020.1 Cma11g00802 303311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00802 1030 PANTHER - 5 1029 - -
Cma11g00802 1030 Pfam Elongation factor Tu GTP binding domain 8 346 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 SMART EFG_C_a 888 977 IPR000640 -
Cma11g00802 1030 Gene3D - 632 885 IPR014721 -
Cma11g00802 1030 TIGRFAM small_GTP: small GTP-binding protein domain 9 138 IPR005225 GO:0005525
Cma11g00802 1030 Gene3D - 3 215 IPR027417 -
Cma11g00802 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 348 IPR027417 -
Cma11g00802 1030 CDD EF2 10 232 - -
Cma11g00802 1030 Pfam Elongation factor G C-terminus 889 972 IPR000640 -
Cma11g00802 1030 Gene3D Elongation Factor G (Translational Gtpase), domain 3 534 611 - -
Cma11g00802 1030 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 CDD eEF2_snRNP_like_C 891 969 - -
Cma11g00802 1030 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924|GO:0005525
Cma11g00802 1030 CDD EF2_snRNP_III 536 607 - -
Cma11g00802 1030 SUPERFAMILY EF-G C-terminal domain-like 534 608 IPR035647 -
Cma11g00802 1030 SUPERFAMILY EF-G C-terminal domain-like 891 989 IPR035647 -
Cma11g00802 1030 CDD aeEF2_snRNP_like_IV 607 895 - -
Cma11g00802 1030 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Cma11g00802 1030 Gene3D Translation factors 350 533 - -
Cma11g00802 1030 Gene3D - 887 1022 - -
Cma11g00802 1030 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 890 IPR020568 -
Cma11g00802 1030 CDD EF2_II 397 521 - -
Cma11g00802 1030 SUPERFAMILY Translation proteins 388 530 IPR009000 -
Cma11g00802 1030 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 1029 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00802 Cma-Chr11:3917130 Cma20g00248 Cma-Chr20:1215379 4.93E-138 dispersed
Cma17g00520 Cma-Chr17:3536510 Cma11g00802 Cma-Chr11:3917130 2.32E-18 dispersed
Cma11g00802 Cma-Chr11:3917130 Cma20g00268 Cma-Chr20:1300103 9.29E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00802 K14536 - csv:101220903 1804.26