Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00814 ATGATGATGATGTTCAATGAGATGGGATTTTGTGACGATATTGATTTCCTTTCGGCTCCGATTGTGGAAGGAGATGTGGTAGCCCCACCGGCCGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGACGTCGATGAGCTCGAGAGGAGGATGTGGAAGGATAAGATGCGTCTTAAGCGTCTTAAAGAGCAGAGTAAGGTTAAGGAAGGAGTCGATATTGCGAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCGAGGGCGCACGATGGGATCTTGAAGTATATGTTGAAGATTATGGAGGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCCGAGAAGGGAAAACCGGTAACTGGGGCGTCTGATAATCTTAGAGAATGGTGGAAAGATAAGGTCCGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAAGCGGATAATTCGATTCCGGGACGAAACGACGGGTGTAATTCGATTGGTCCAACCCCACACACCTTGCAGGAACTCCAAGATACTACCCTTGGATCGCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGGTTTCCGTTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTACTGGTGTCGAGGAATGGTGGCCTCAGCTCGGGTTACCGAAGGACCAAGGTCCCCCACCTTACAAGAAGCCTCACGACTTAAAGAAGGCGTGGAAAGTCGGTGTTTTGACTGCGGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTCGTTAGGCAATCGAAGTGTTTGCAGGACAAGATGACTGCTAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAAGAGGAGGTCTTGGCTCGGGAGCTTTACCCCGACTCGTGCCCACCTTTATCGTCCGGTGGGGGAAGTGGATCACTAGTCATTAACGATTGTAGCGAGTATGATGTAGAAGGTGCCGAGGAAGAACCGAACTTCGATGTTCAAGAACGCAAACCCGATAACCATAGCTCATTCAGCTTAGGAATGGAGAGAATGAGAGAACACGTACCCCTTCGACAACCTCCTTATGCAATCAAAGGAGAAGTCGTTGTCGCCGCCGCCGCAAACTTGGATTTTATGCGAAAGAGGAAGCCAACGTGCGATCTGAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTCAATGACAGAACGTCGAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCGGAGTTCAGCGGTTCAAATTTTCACGTCAACGAGGTTAAACCAGTTATCTTCCCACAATCGTTCGCCCCACCCAAACCAGCTCCACCTCCCGTCAGCTCGGTCCCGTCTTCCTTCGACTTGTCAAGTTTGGGAGTTCCAGAAGACGGTCAAAAGCACATCAGTGAGCTCATGTCGATCTACAACACGAACATCCAAGGCAACAAGAACAATGTAATCACCATCACAGAGAACCAAAATCAAGGTGTAATGATCGACGCTAATTTCTTCGAAGGATCGAGTCTTTCAAACAGCCATCAAATGTTCACAAGACCGATGAATTCTTCGTTCGAAAACAACCACCAAAACAACAACAACAACAACAACAACAACTTTCACTTGATGTTCGGCTCTCCGTTCGATTTGTCGACGTTCGACTACAAAGAAGAAGTACACGGAGGAGCAGCAGCCATCGACACACTGTCGAAACACCAGGATATTCCGTTATGGTATCAGTAA 1812 47.68 MMMMFNEMGFCDDIDFLSAPIVEGDVVAPPADPEVVVEDDYSDEEIDVDELERRMWKDKMRLKRLKEQSKVKEGVDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPNFDVQERKPDNHSSFSLGMERMREHVPLRQPPYAIKGEVVVAAAANLDFMRKRKPTCDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKHISELMSIYNTNIQGNKNNVITITENQNQGVMIDANFFEGSSLSNSHQMFTRPMNSSFENNHQNNNNNNNNNFHLMFGSPFDLSTFDYKEEVHGGAAAIDTLSKHQDIPLWYQ 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3982932 3984743 - CmaCh11G008140.1 Cma11g00814 303323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00814 603 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Cma11g00814 603 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Cma11g00814 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 602 IPR006957 GO:0005634
Cma11g00814 603 MobiDBLite consensus disorder prediction 73 92 - -
Cma11g00814 603 Coils Coil 48 68 - -
Cma11g00814 603 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cma11g00814 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 602 - -
Cma11g00814 603 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00814 Cma-Chr11:3982932 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma10g00973 Cma-Chr10:5025672 Cma11g00814 Cma-Chr11:3982932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35838 PF04873 EIN3 2.30E-129 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00814 K14514 - csv:101206055 1025.0