Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00827 ATGGAAGACGAAGCATCCTCCACCTTCATTTCCTTCACTAAGTCCCCTCTCCTCATAGATGAAGTTTCAGATTCTAATTTCTCAGATTATGCCATACCTGATGCCAAGCGGATGAGATTAGACCATGATCTTAATGATGTAGCCACCGTCGAGAAATTTAAAGGCGTCGTGCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTATGCGAACCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAAAGACGCTGCCATGGCTTATGATAGTGCCGCTATCAAGCTTCGCACCAGAGACTCTCACCGGAATTTCCCATGGACTCGCCTATCAATCGAGGAGCCGAAATTTCAAAGCAAATTCTCCATTGACGCCGTTCTCAGCATGATCAAAGACGGATCGTATTCCTCGAAATTTTCCGCCTACTTACGAACGAAGTCTCAAATTTGCGACTCGAATATACAGAACCTCCAAACTAGTGAAAATGGCGACCGCGATGGCCATTTCTCTTGCAGCCATCTATTCCAGAAGGAATTAACACCGAGCGACGTCGGAAAGCTCAATCGACTCGTAATCCCGAAAAAATACGCAGTGAAACATTTTCCGTACATTAGCGAGAGCGCAGAGGAGAATAGCGACGATATCGAAATCGTCTTCTACGATACATCAATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAAAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAAGAGAAAAAGCTGAAGGCGAATGACATCATCACGTTTTACACATACGAAAGCTGCGAAAGAGACAAAAATGGCGGAACATTGATTTTCATTGACGTAATCTACAAGAAACCGGAAGATGACCAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAGAGAGAGTATTAAGCACGAACAATTGCAGAGAGAATTAGGGCTTGATCGGGAGGACTGCCCGCTTGATCTTGTTGCAGTATCCATTGCCGCGCTCTATCCGTCGCCAAGATATATAGCCATCTTGTATAAGATGTCGACAACCGGAGCCTATAATATTCCGATGTGCACACTGAGAAACAGCAAGCTCTCTTCTGCTAAACTTAAAAATGTCTACAATGTCTCCGCTTTGAAACACTTTCAGCTGAATTCCACCACTTTATCTTCTACAAGAACTGGGAAGATTGCAACTAGTGCTATGTCTGGATCTAATGAACACCAACCAGTCTCTGGGTTGCCGATTGATTTAAAAGGTAAGCGGGCATTCATTGCTGGTGTAGCGCTGATGACAATGGTTATGGTTGGGCAATAG 1317 45.79 MEDEASSTFISFTKSPLLIDEVSDSNFSDYAIPDAKRMRLDHDLNDVATVEKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRLSIEEPKFQSKFSIDAVLSMIKDGSYSSKFSAYLRTKSQICDSNIQNLQTSENGDRDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCERDKNGGTLIFIDVIYKKPEDDQSESSCLAAERESIKHEQLQRELGLDREDCPLDLVAVSIAALYPSPRYIAILYKMSTTGAYNIPMCTLRNSKLSSAKLKNVYNVSALKHFQLNSTTLSSTRTGKIATSAMSGSNEHQPVSGLPIDLKGKRAFIAGVALMTMVMVGQ 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4146868 4151511 + CmaCh11G008270.1 Cma11g00827 303336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00827 438 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Cma11g00827 438 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Cma11g00827 438 SMART B3_2 176 275 IPR003340 GO:0003677
Cma11g00827 438 SUPERFAMILY DNA-binding pseudobarrel domain 174 270 IPR015300 -
Cma11g00827 438 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Cma11g00827 438 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Cma11g00827 438 CDD B3_DNA 174 281 IPR003340 GO:0003677
Cma11g00827 438 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Cma11g00827 438 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Cma11g00827 438 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Cma11g00827 438 Gene3D - 166 293 IPR015300 -
Cma11g00827 438 Gene3D AP2/ERF domain 51 108 IPR036955 GO:0003700|GO:0006355
Cma11g00827 438 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 316 IPR044800 GO:0003700
Cma11g00827 438 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 20 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00479 Cma-Chr10:2171824 Cma11g00827 Cma-Chr11:4146868 3.09E-98 dispersed
Cma11g00470 Cma-Chr11:2279209 Cma11g00827 Cma-Chr11:4146868 7.90E-106 dispersed
Cma11g00827 Cma-Chr11:4146868 Cma18g01042 Cma-Chr18:8666735 3.23E-55 dispersed
Cma10g00655 Cma-Chr10:2966036 Cma11g00827 Cma-Chr11:4146868 6.51E-07 transposed
Cma11g00827 Cma-Chr11:4146868 Cma02g01220 Cma-Chr2:7203169 4.83E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35840 PF02362 B3 9.60E-27 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00827 K09287 - csv:101219913 543.117