Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00828 ATGAGGCCTGTCAAACGCGAACCCGCCGCTAGCAGCCGCAGTAATCAGAGTAAAGGCGGCGACGCCGTCGATGCTGCGAATTTAAGAGATGTTAAGCGGGCGAGGGTTGCTCGGGAGAAAGAGAACATCGGTGATGGCAACATGGCTGAAGCAGAAGAGGGTCAACAAGGCTTGACGAAGCGGCGGGTTCTCCGGTCTCGGTATCTTGCGGTCATTCACGAGATTAGTGAAAGGAGAGAGGATTTGACGAAGGATTCGGACAAGTTCAATGTTATCATCAATGAAGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCCTTGCAAGATATTGCAAACTCCTTGGTGACCTCTATTAAGTCGCAGTCAAATGAAGGTGTTACTCCATCAGATTTTGTGAGCTGTCTGCTCAAAGAATTTGCTGACATTGAAGGCGGTATAACATCCGAAGAAAACGATCCGATTTCTATCAGTTGGAAAGATATCGGATTAAGCGTTTCGTCTATTTTCATGAATGGCCATGGATGCCGCACCATGCTTGGACCTATGAGCACTCAGTTGAAGCAGCGAAAGACTAATATTGCCCGGAAACGTTCAAGGCCTACTGAAAGTTCGAGACCTGCAGAGGTTGATGAAGATGGATCTGAAGAAAAAACGGATACAGATAAGAACATGAGCATCATGTTTGGAATTTTGAGGAGGAATAAAACCGTTAGACTTGAACATTTGATATTGAATAGAAACTCTTTTGCACAGACAGTAGAGAACTTATTTGCTCTCTCCTTTCTGGTCAAGGATGGTCGGGCCGAGATAACTATTGATAAAAATGGTTCTCATTTTGTATCTCCGAAGAATGCCCCGGCCCATAGTGCCATTATGTCACACGAAGTTAATTATAGTCACTTTGTATTCAGATTCGATTTTAAGGATTGGAAGTTGATGATGGATATAGTTCCAGTTGGAGAGGAGTTGATGCCCCACAGGAACTTTCTAAATACAGCACCAATGCCCCAAGCAGAAGCAGCCACGGACGATTCTGAATCAGCGGCATTGCCTACCACGCCAATTCGAAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAGGATTCCCCTGATAATGATGGCGCTCATTCAGGACCAACTGCAATGTTGAGGTGCAAGAAAAAGCTTAGTCAAGGTTAG 1218 44.99 MRPVKREPAASSRSNQSKGGDAVDAANLRDVKRARVAREKENIGDGNMAEAEEGQQGLTKRRVLRSRYLAVIHEISERREDLTKDSDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIKSQSNEGVTPSDFVSCLLKEFADIEGGITSEENDPISISWKDIGLSVSSIFMNGHGCRTMLGPMSTQLKQRKTNIARKRSRPTESSRPAEVDEDGSEEKTDTDKNMSIMFGILRRNKTVRLEHLILNRNSFAQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDFKDWKLMMDIVPVGEELMPHRNFLNTAPMPQAEAATDDSESAALPTTPIRKLSRNRGLVMQSVVEDSPDNDGAHSGPTAMLRCKKKLSQG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4150177 4153419 - CmaCh11G008280.1 Cma11g00828 303337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00828 405 MobiDBLite consensus disorder prediction 197 228 - -
Cma11g00828 405 MobiDBLite consensus disorder prediction 204 228 - -
Cma11g00828 405 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 30 402 - -
Cma11g00828 405 Pfam Nse4 C-terminal 246 333 IPR014854 -
Cma11g00828 405 MobiDBLite consensus disorder prediction 346 405 - -
Cma11g00828 405 MobiDBLite consensus disorder prediction 1 28 - -
Cma11g00828 405 PANTHER UNCHARACTERIZED 30 402 IPR027786 GO:0005634|GO:0006281|GO:0030915
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00828 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 650.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00964 Cma11g00828 CCT
Cma10g00964 Cma11g00828 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00964 Cma-Chr10:4916574 Cma11g00828 Cma-Chr11:4150177 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g128 . . . . . Bpe08g01238 . . Cmo10g01012 Cmo11g00835 Cma10g00964 . . . Sed08g1045 . Cpe18g00141 Bhi02g01603 Tan09g0895 Cmetu02g0721 . . . . . . . . . . . . . Cone18ag0124 Cone11ag1467 Lsi06g00472 . . . . . . . . . . . . . . Cma11g00828 . . . . Cpe04g00939 . . . . . . . Cla03g01320 Cam03g1398 Cec03g1430 Cco03g1418 Clacu03g1417 Cmu03g1978 Cre03g1651 . Csa01g03120 Chy02g01406 Cme02g00472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00828 CCT,ECH 55 403 Non-SMC Element family AT1G51130 57.2 2.7e-104 376.3
Cma10g00964 CCT,ECH 29 404 Non-SMC Element family AT1G51130 53.3 5.5e-97 352.1
Cma11g00828 CCT,ECH 52 387 Non-SMC Element family AT3G20760 52.2 8.1e-90 328.2
Cma10g00964 CCT,ECH 51 384 Non-SMC Element family AT3G20760 50.9 8.3e-87 318.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00828 Cma_Chr11 FPKM 2.771654 4.139872 4.107475 3.23637 5.457604 4.930985 6.139167 5.903951 6.238268 6.68169