Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00834 ATGGAGAATCTTATGATGGTTGATGATACGTTGGGATATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGAACCCGAGGATTTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAACGACAGAAGATTGCGGCACAACAGGCTGCAGAGAAGCAGAAGCCAAAGCATACGTCTGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTACATGTTAAAACTTATGGAAGTATGTAAAGCTCGGGGATTTGTATATGGCATTATTCCAGAAAAGGGGAAACCGGTTAGCGGTGCTTCTGATAACATTCGAGCGTGGTGGAAAGAAAAGGTTAAATTTGATAAGAACGGGCCGGCTGCCATAGCCAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGACAGATGGAAATGGAAATAGGAATTCCCAGAGCGTTCTTCAAGATCTTCAGGATGCGACACTCGGGTCTCTTTTGTCTTCGTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAAGGGGTCCCTCCACCTTGGTGGCCCTCTGGAAATGAAGCTTGGTGGGAAAAACTCGGGCTATCTCATGGCGTTAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAGGTCGGGGTTTTAACGGCTGTGATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCATGTACGTCAGTCGAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATATGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGCGATAATGGGGCATCTGAAATTACAGAGACACCGGTCGGTGGTCGTGGTGGAAAGCAAGCTGCCATTAGTAGTGACAGTGACTATGATGTTGATCTTGCAGATGATGGTGGGTCAATTTCTCGTAAAGATGACAGGAGAAATCGATTGGTGGATGCTGAGCCATCCAGTAATCTACGCAACAATGCTCCTCAACCTGCTCAAGTAAAGGAGCAAGGTGAACAGCATCGGAGAAAAAGACATCGTGGTGGCATGACAAAACCTGCTGATGAAACACTGAACGAGGAAGAATTAAACGTCGAGCCAAGAAATACTCATCTAGATATAAATCATTCTGATGTACCATTAGGTAGACATGAAATTCCAGGAAACCAACCCGAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAAGATATGGATGTCCGATCAGACGTACCAGCTCCCCAGTTCGACATGTTCTCCACGAGTGCCACGGATAATATCAACATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCCGTAATGCAGAATGTCGACGTGCAACAGGAAAGCGCTTACGATATTTATAATCCACCAGTGGAATATAATTCCAACTATGATGTACAGCATCCTCAATTTGTTAACGAGCCTCAATTAAGATCGGAGGAAGGATTACATGTGCCAACACAAAATAGAAACGACGAGACGATTGGAGGAGATTTCAACTATATAAAAGAAACGTTCGACAACAAACAAGATAGGCCTGTTGATTCACAGTTTGGATCACCAATCAATAGTCTCTCATTAGATTATGGAGCATTTAACAGTCCATTCCATCTTGGAATCGACGTTTCGAGCTCGTTCGATGACTTCTTGGTTGACGACGATTTGATCCAATACTTCGGAGCTTAG 1797 43.8 MENLMMVDDTLGYCSDMEVDDIRCDNIAEKDVSDEEIEPEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKHTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGETDGNGNRNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEAWWEKLGLSHGVSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASEITETPVGGRGGKQAAISSDSDYDVDLADDGGSISRKDDRRNRLVDAEPSSNLRNNAPQPAQVKEQGEQHRRKRHRGGMTKPADETLNEEELNVEPRNTHLDINHSDVPLGRHEIPGNQPEKDTVTALRPLEKDMDVRSDVPAPQFDMFSTSATDNINIISTQSMYVDGRPLLYPVMQNVDVQQESAYDIYNPPVEYNSNYDVQHPQFVNEPQLRSEEGLHVPTQNRNDETIGGDFNYIKETFDNKQDRPVDSQFGSPINSLSLDYGAFNSPFHLGIDVSSSFDDFLVDDDLIQYFGA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4196599 4198395 + CmaCh11G008340.1 Cma11g00834 303343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00834 598 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 MobiDBLite consensus disorder prediction 71 85 - -
Cma11g00834 598 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Cma11g00834 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 597 IPR006957 GO:0005634
Cma11g00834 598 MobiDBLite consensus disorder prediction 62 85 - -
Cma11g00834 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 597 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 289 382 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 348 363 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 329 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00834 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210347 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00834 Cma-Chr11:4196599 Cma16g00693 Cma-Chr16:3614514 3.30E-98 dispersed
Cma11g00834 Cma-Chr11:4196599 Cma15g00551 Cma-Chr15:2568863 4.37E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g153 Blo03g00996 . . . . . Bma14g00784 . . Cmo11g00844 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00508 . . . . . Bda07g00734 . . Bpe11g00907 . . . . . Cma11g00834 . . . . Cpe04g00932 . . . . . . . Cla03g01291 Cam03g1360 Cec03g1399 Cco03g1385 Clacu03g1384 Cmu03g1950 Cre03g1623 . Csa01g03142 Chy02g01432 Cme02g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00814 . 2 602 EIL Transcription Factor Family AT2G27050 61.6 8.0e-198 687.6
Cma10g00973 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 8.0e-190 661.0
Cma04g02492 . 7 523 EIL Transcription Factor Family AT2G27050 58.3 1.1e-159 560.8
Cma15g00551 . 1 508 EIL Transcription Factor Family AT2G27050 59.5 4.3e-159 558.9
Cma11g00834 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 1.1e-90 331.6
Cma11g00834 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.4e-73 273.9
Cma11g00834 . 58 573 EIL Transcription Factor Family AT1G73730 54.2 4.0e-138 489.2
Cma11g00814 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 4.4e-105 379.4
Cma10g00973 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.3e-104 375.2
Cma04g02492 . 39 334 EIL Transcription Factor Family AT1G73730 60.4 9.5e-100 361.7
Cma15g00551 . 40 335 EIL Transcription Factor Family AT1G73730 59.7 2.3e-98 357.1
Cma16g00693 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 5.6e-76 282.7
Cma04g00807 . 111 360 EIL Transcription Factor Family AT1G73730 54.5 1.8e-74 277.7
Cma10g00973 . 3 619 EIL Transcription Factor Family AT3G20770 62.5 1.6e-207 719.9
Cma11g00814 . 3 602 EIL Transcription Factor Family AT3G20770 61.5 2.0e-207 719.5
Cma04g02492 . 6 609 EIL Transcription Factor Family AT3G20770 51.5 1.1e-163 574.3
Cma15g00551 . 7 512 EIL Transcription Factor Family AT3G20770 59.0 3.0e-158 556.2
Cma11g00834 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.3e-92 335.9
Cma11g00834 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cma16g00693 . 19 356 EIL Transcription Factor Family AT5G10120 57.3 4.1e-104 375.9
Cma04g00807 . 108 445 EIL Transcription Factor Family AT5G10120 58.2 3.5e-103 372.9
Cma11g00834 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35841 PF04873 EIN3 1.10E-126 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00834 Cma_Chr11 FPKM 20.508625 23.993269 20.532625 21.834614 11.498733 13.050339 11.680335 22.666988 24.768593 21.338802