Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00834 ATGGAGAATCTTATGATGGTTGATGATACGTTGGGATATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGAACCCGAGGATTTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAACGACAGAAGATTGCGGCACAACAGGCTGCAGAGAAGCAGAAGCCAAAGCATACGTCTGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTACATGTTAAAACTTATGGAAGTATGTAAAGCTCGGGGATTTGTATATGGCATTATTCCAGAAAAGGGGAAACCGGTTAGCGGTGCTTCTGATAACATTCGAGCGTGGTGGAAAGAAAAGGTTAAATTTGATAAGAACGGGCCGGCTGCCATAGCCAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGACAGATGGAAATGGAAATAGGAATTCCCAGAGCGTTCTTCAAGATCTTCAGGATGCGACACTCGGGTCTCTTTTGTCTTCGTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAAGGGGTCCCTCCACCTTGGTGGCCCTCTGGAAATGAAGCTTGGTGGGAAAAACTCGGGCTATCTCATGGCGTTAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAGGTCGGGGTTTTAACGGCTGTGATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCATGTACGTCAGTCGAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATATGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGCGATAATGGGGCATCTGAAATTACAGAGACACCGGTCGGTGGTCGTGGTGGAAAGCAAGCTGCCATTAGTAGTGACAGTGACTATGATGTTGATCTTGCAGATGATGGTGGGTCAATTTCTCGTAAAGATGACAGGAGAAATCGATTGGTGGATGCTGAGCCATCCAGTAATCTACGCAACAATGCTCCTCAACCTGCTCAAGTAAAGGAGCAAGGTGAACAGCATCGGAGAAAAAGACATCGTGGTGGCATGACAAAACCTGCTGATGAAACACTGAACGAGGAAGAATTAAACGTCGAGCCAAGAAATACTCATCTAGATATAAATCATTCTGATGTACCATTAGGTAGACATGAAATTCCAGGAAACCAACCCGAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAAGATATGGATGTCCGATCAGACGTACCAGCTCCCCAGTTCGACATGTTCTCCACGAGTGCCACGGATAATATCAACATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCCGTAATGCAGAATGTCGACGTGCAACAGGAAAGCGCTTACGATATTTATAATCCACCAGTGGAATATAATTCCAACTATGATGTACAGCATCCTCAATTTGTTAACGAGCCTCAATTAAGATCGGAGGAAGGATTACATGTGCCAACACAAAATAGAAACGACGAGACGATTGGAGGAGATTTCAACTATATAAAAGAAACGTTCGACAACAAACAAGATAGGCCTGTTGATTCACAGTTTGGATCACCAATCAATAGTCTCTCATTAGATTATGGAGCATTTAACAGTCCATTCCATCTTGGAATCGACGTTTCGAGCTCGTTCGATGACTTCTTGGTTGACGACGATTTGATCCAATACTTCGGAGCTTAG 1797 43.8 MENLMMVDDTLGYCSDMEVDDIRCDNIAEKDVSDEEIEPEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKHTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGETDGNGNRNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEAWWEKLGLSHGVSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASEITETPVGGRGGKQAAISSDSDYDVDLADDGGSISRKDDRRNRLVDAEPSSNLRNNAPQPAQVKEQGEQHRRKRHRGGMTKPADETLNEEELNVEPRNTHLDINHSDVPLGRHEIPGNQPEKDTVTALRPLEKDMDVRSDVPAPQFDMFSTSATDNINIISTQSMYVDGRPLLYPVMQNVDVQQESAYDIYNPPVEYNSNYDVQHPQFVNEPQLRSEEGLHVPTQNRNDETIGGDFNYIKETFDNKQDRPVDSQFGSPINSLSLDYGAFNSPFHLGIDVSSSFDDFLVDDDLIQYFGA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4196599 4198395 + CmaCh11G008340.1 Cma11g00834 303343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00834 598 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Cma11g00834 598 MobiDBLite consensus disorder prediction 71 85 - -
Cma11g00834 598 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Cma11g00834 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 597 IPR006957 GO:0005634
Cma11g00834 598 MobiDBLite consensus disorder prediction 62 85 - -
Cma11g00834 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 597 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 289 382 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 348 363 - -
Cma11g00834 598 MobiDBLite consensus disorder prediction 329 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00834 Cma-Chr11:4196599 Cma16g00693 Cma-Chr16:3614514 3.30E-98 dispersed
Cma11g00834 Cma-Chr11:4196599 Cma15g00551 Cma-Chr15:2568863 4.37E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35841 PF04873 EIN3 1.10E-126 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00834 K14514 - csv:101210347 1003.05