Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00848 | ATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAATGGTACTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGATACAATCCTATTCCGCTACCTGTGGTAGGGGGAAATTCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAATCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTACGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTGAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG | 813 | 45.63 | MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPVVGGNSSSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPTVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4281494 | 4285629 | + | CmaCh11G008480.1 | Cma11g00848 | 303357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 252 | 270 | - | - | |
Cma11g00848 | 270 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 35 | 258 | - | - | |
Cma11g00848 | 270 | PRINTS | CCAAT-binding transcription factor subunit B signature | 175 | 197 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | PRINTS | CCAAT-binding transcription factor subunit B signature | 206 | 229 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | ProSiteProfiles | NF-YA/HAP2 family profile. | 172 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 227 | 251 | - | - | |
Cma11g00848 | 270 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 175 | 229 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 41 | 72 | - | - | |
Cma11g00848 | 270 | Gene3D | - | 172 | 234 | - | - | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 83 | 98 | - | - | |
Cma11g00848 | 270 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 35 | 258 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | SMART | cbf3 | 171 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 39 | 98 | - | - | |
Cma11g00848 | 270 | MobiDBLite | consensus disorder prediction | 197 | 270 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00928 | Cma11g00848 | CCT | |
Cma10g00928 | Cma11g00848 | ECH | |
Cma11g00848 | Cma20g00089 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00526 | Cma-Chr8:3030325 | Cma11g00848 | Cma-Chr11:4281494 | 1.00E-48 | dispersed | |
Cma11g00848 | Cma-Chr11:4281494 | Cma17g00955 | Cma-Chr17:7113927 | 1.63E-51 | dispersed | |
Cma10g00928 | Cma-Chr10:4642922 | Cma11g00848 | Cma-Chr11:4281494 | 5.02E-164 | wgd | |
Cma11g00848 | Cma-Chr11:4281494 | Cma02g01253 | Cma-Chr2:7361987 | 1.31E-98 | wgd | |
Cma11g00848 | Cma-Chr11:4281494 | Cma20g00089 | Cma-Chr20:381712 | 9.35E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35843 | PF02045 | CBFB_NFYA | 1.00E-25 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00848 | K08064 | - | csv:101212860 | 462.996 |