Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00848 ATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAATGGTACTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGATACAATCCTATTCCGCTACCTGTGGTAGGGGGAAATTCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAATCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTACGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTGAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG 813 45.63 MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPVVGGNSSSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPTVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4281494 4285629 + CmaCh11G008480.1 Cma11g00848 303357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00848 270 MobiDBLite consensus disorder prediction 252 270 - -
Cma11g00848 270 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 35 258 - -
Cma11g00848 270 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 MobiDBLite consensus disorder prediction 227 251 - -
Cma11g00848 270 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 229 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 MobiDBLite consensus disorder prediction 207 226 - -
Cma11g00848 270 MobiDBLite consensus disorder prediction 41 72 - -
Cma11g00848 270 Gene3D - 172 234 - -
Cma11g00848 270 MobiDBLite consensus disorder prediction 1 22 - -
Cma11g00848 270 MobiDBLite consensus disorder prediction 83 98 - -
Cma11g00848 270 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 258 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Cma11g00848 270 MobiDBLite consensus disorder prediction 39 98 - -
Cma11g00848 270 MobiDBLite consensus disorder prediction 197 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00928 Cma11g00848 CCT
Cma10g00928 Cma11g00848 ECH
Cma11g00848 Cma20g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00526 Cma-Chr8:3030325 Cma11g00848 Cma-Chr11:4281494 1.00E-48 dispersed
Cma11g00848 Cma-Chr11:4281494 Cma17g00955 Cma-Chr17:7113927 1.63E-51 dispersed
Cma10g00928 Cma-Chr10:4642922 Cma11g00848 Cma-Chr11:4281494 5.02E-164 wgd
Cma11g00848 Cma-Chr11:4281494 Cma02g01253 Cma-Chr2:7361987 1.31E-98 wgd
Cma11g00848 Cma-Chr11:4281494 Cma20g00089 Cma-Chr20:381712 9.35E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35843 PF02045 CBFB_NFYA 1.00E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00848 K08064 - csv:101212860 462.996