Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00865 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCTTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCACCTAAACTGGGCTCTCCATATCCATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGCTTGTATTTGATCCATTTGTTGCTTACTTGTGCTAACCATGTGGCTGTTGGCAGCCTTGACAATGCTAATCTTGCTCTTGATCAGATATCCCATCTTGCTTCTGCTGATGGCGATACAATGCAGCGGATAGCAGCGTACTTCGCTGAGGCTCTCGCCGATCGAATCCTTAAAACTTGGCCTGGCCTTTATAAGGCCTTTAACTCCACAAAGATACCTGTGGTTTCAGAGGAGATTCTTGTTAAGAAGCTGTTTTTTGAGGTGTTTCCATTCCTCAAGGTGGCTATTGTGCTTACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATCATTGATCTCAATGCAAATGAAACTGCTCAATGGCTTGCACTTTTGCAAGTTTTGAGTGTCAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCAACAGAAACAGGTTCTGGATCGAATGGCTCGTCGGCTAACCGAAGAAGCTGAAAAGTTTGATATCCCATTTCGATTCGATTCGGTTGTCTGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACAGGGGAGGCTCTGGCTATCAGCTCAGTTCTTCAGTTGCATACCCTTTTGGCAGCTGATAATGAAGTCCGGCAAAAGTCATCTCCATTAGCAGGAAAGAGTGCCAATGGAGTTCATTACTCGAGATACCAGCACCCGAACCAAACTAACTTGAGTGAGTTACTCGAAAAGGATTCGATTAATGGGTGCAGTCCGAGTCCCGATTCGGTATCTTCATCAGCATTATCTCAAGCCAACGTGACGAAGATCGAAAGCTTCTTGAATGGATTGTGGAGTTTGACGCCGAAGGTGATGGTCGTAACCGAACAAGATTCTAACCATAATGGTGCAACACTTATGGAGAGATCACTAGAGGCTCTCCACACATATGCAGCAATCTTTGATTGCCTGGAATCTAATATGTCAAGAACATCCGTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAAATAAAGAACATTATAGCTTGTGAGGGAGGTGAAAGGAAGGAACGACACGAGAAGCGTGAGAAATGGAGTCAACGGTTCGATCTCGCAGGGTTCAGGCATGTGCCTTTGAGTTATTATGGCATGCTGCAGGCAAGGAGCCTGCTGCAGGGGTATGGTTGTGATGGTTATAAGCTGAAGGAAGATAATGGTTGTGTTATGATTTGTTGGCAAGATAGTTCGTTGTTCTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 44.99 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPVVSEEILVKKLFFEVFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHQQKQVLDRMARRLTEEAEKFDIPFRFDSVVCRLEDLDMEKLRVKTGEALAISSVLQLHTLLAADNEVRQKSSPLAGKSANGVHYSRYQHPNQTNLSELLEKDSINGCSPSPDSVSSSALSQANVTKIESFLNGLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSVERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGFRHVPLSYYGMLQARSLLQGYGCDGYKLKEDNGCVMICWQDSSLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4396210 4397625 - CmaCh11G008650.1 Cma11g00865 303374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00865 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Cma11g00865 471 PANTHER SCARECROW-LIKE PROTEIN 3 2 470 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cma11g00865 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 470 IPR005202 -
Cma11g00865 471 Pfam GRAS domain family 46 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00865 Cma-Chr11:4396210 Cma04g02984 Cma-Chr4:19554944 2.72E-80 dispersed
Cma18g00879 Cma-Chr18:7609105 Cma11g00865 Cma-Chr11:4396210 0 transposed
Cma10g00910 Cma-Chr10:4525897 Cma11g00865 Cma-Chr11:4396210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35845 PF03514 GRAS 1.90E-136 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00865 - - csv:101215435 815.068