Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00901 ATGGTGGAGGGATCTAAAGAGACCTTAACCAATGATCACCATGGTTGGCTCAAAGCCAAAGCGTGGAAGTTGCACAAAAAAATGGTTGAATTATTAAACAATGCAACGAAGGTGGGGAAAGACGACCCCAGAAGAATAGTTCATTCTTTAAAGCTTGGATTAGCCATCACCACTGTCTCCTTGTTCTTCTATTTCGAGCCTCTCTACGATGGCTTGGGCGCATCTTCGATATGGGCTATCATTACCGTCGTAGTCGTCTTCGAGTTTTCTGTAGGAGCAACGCTGGGAAAAGGGATGAATAGAGCAATAGCAACATTAATAGCTGGAGCTATAGGATTTGGAGCTCATTACATCACAAGCTTTACAGGAAATATTTGGCATCCCATATTACTTGGGATCTTGATATACACAATATCTGCCACAGCCTCATATTGTCGATTCTTCCCCAAGCTGAAGGCCAAATATGATTATGGGCTTTTGATATTCATCTTGACATTCAATATGGTAGCATTGTCCGGTTTCAGAGATGATGAGATATTAAAACTTGCATGGCATAGGCTCGCCAACATTCTAGTGGGTGCCTTTATTGCTGTGGCTATTTGCATCTTTGTGCGACCTGTTTGGGCTGGTGCTGATCTTCATCAATTTGTTGCTACTAATATTGAAAACCTTGGGACATTCCTTGAAGGTTTTGGGATTGAGTATTTTGGAGCATGTCAAGGAGAGATGGTTGGAGGAGGGAATGTGATGAAGTATAGAAGTGTCCTTTGTTCTAAACAAAATGAGGAAGCTTTGAAGATTGGTACCTTATCAAGGGACTGTGCCTATTGCTTCGAAATTCTTAACCTCTACCTCAACACGGACCAGATTCAATTACCCCTAGAAATTCAAAGGCAATACCAAGAGCAATGCGTACAAGTATGCATTGAATCAAGTAAAGCTTTGAAGGCCATGGCTAAGGCATTAAGAGATATAGTTCCACCGGCCTTGGCCAAGTCCCACATCGAGATAGCAAAAAAGACGGCTGGTGAGCTCAAGCTTCTTCTAGCGAGTAGCCACTTTCATGGCGATATGAATATGGTATCAACCACAACTTTGATTTTACTACTCATTGATTCCTTCTCTTGTGTGGAGAAGATTGTTGATTCTATTCATGAGTTGGTATCGCTTGCTCGGCTGAACACTGCGCTGCAGAAGTCCGATGTAACGCCGACCGAGCAAAAGGGTTCGGGTGATAAGGCTTCGTCACAACCTCATCATATTGTTACCATTGCTCAAAGTCAATTTGCCGACCTGCTTCTCTGCAACAAAGCTATGGCCACTCAGGCTCTTGTTTCATCCTCGTCCCTAACCTCTTCAGTGGGTGCTGCCAGACAGCGATTAGGACCAAAGCCGTCCCTTGGTTCCTCCAGAAAGGCCGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCAAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACGTATTTGGATGGAAGTCTTCCAGGCGATTATGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAAATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTCGCGATGTTAGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTGATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGTTGGAGATGGCTCTAATGGGCTTTGCAGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAACAATACTTTTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCAGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGAAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTTACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTTAAGTTCCACTAG 2139 45.35 MVEGSKETLTNDHHGWLKAKAWKLHKKMVELLNNATKVGKDDPRRIVHSLKLGLAITTVSLFFYFEPLYDGLGASSIWAIITVVVVFEFSVGATLGKGMNRAIATLIAGAIGFGAHYITSFTGNIWHPILLGILIYTISATASYCRFFPKLKAKYDYGLLIFILTFNMVALSGFRDDEILKLAWHRLANILVGAFIAVAICIFVRPVWAGADLHQFVATNIENLGTFLEGFGIEYFGACQGEMVGGGNVMKYRSVLCSKQNEEALKIGTLSRDCAYCFEILNLYLNTDQIQLPLEIQRQYQEQCVQVCIESSKALKAMAKALRDIVPPALAKSHIEIAKKTAGELKLLLASSHFHGDMNMVSTTTLILLLIDSFSCVEKIVDSIHELVSLARLNTALQKSDVTPTEQKGSGDKASSQPHHIVTIAQSQFADLLLCNKAMATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4620124 4625773 - CmaCh11G009010.1 Cma11g00901 303410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00901 712 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 439 711 - -
Cma11g00901 712 MobiDBLite consensus disorder prediction 399 418 - -
Cma11g00901 712 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 439 711 IPR001344 GO:0009765|GO:0016020
Cma11g00901 712 Pfam Chlorophyll A-B binding protein 503 681 IPR022796 -
Cma11g00901 712 Gene3D Chlorophyll a/b binding protein domain 493 711 - -
Cma11g00901 712 Pfam Aluminium activated malate transporter 37 265 IPR020966 GO:0015743
Cma11g00901 712 SUPERFAMILY Chlorophyll a-b binding protein 491 708 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00867 Cma11g00901 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00868 Cma-Chr10:4280103 Cma11g00901 Cma-Chr11:4620124 1.31E-19 dispersed
Cma11g00901 Cma-Chr11:4620124 Cma14g00358 Cma-Chr14:1578746 9.89E-101 dispersed
Cma11g00901 Cma-Chr11:4620124 Cma11g00902 Cma-Chr11:4629489 9.87E-105 tandem
Cma10g00869 Cma-Chr10:4282043 Cma11g00901 Cma-Chr11:4620124 1.71E-162 transposed
Cma10g00866 Cma-Chr10:4255591 Cma11g00901 Cma-Chr11:4620124 8.30E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00901 K08909 - csv:101219474 553.903