Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00912 ATGGATGCAGTTGATTTGATCTTCCACTCGCCACCCAAAACGTCGTCGTTCCCTTGCAGTTCCAATATTTTCCCGGGCGGGTTTCTAGCTGTTGGTCTGTTCTTAGCCAACACTATTGAATGCACCATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTCAGTTCGAAGAAATCGGAAAAATCTCAATCATCAGAACATGAAGAAAATGCGAGGACAGTTACGAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATCGATGCTGATAAACTTGAGCACGAGTTCAATTCAAATTTTACCCCATTTATTGAAGAGGCCAATGCCCTTTCGGATCCAGAAGCTGCTTCTATTCCTTCTGGTTCACTTCAAATATGTGATGCATTGCGTAGTCGACAGAATGATATAGAAGAACAGGCGGCTATACGTATCCAAACAATGTTTCGATCGTTTCTGGCTAGAAGAGCTCTCCGAGCTCTGAAGGGATTGGTTAGACTTCAAGCTCTTGTTAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAGCAGAAAATTCAACAACAACTTGAAAACCAAGCCCGTGAAGGTTGGTGCGACAGTGTTGGATCTGTTGAAGAAATTCAAGTAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCTATGGCATATGCCCTGGCTCATCAGTGGCAAGCAGGATCGAGACAGCAGGCTGCCCTCTCCGAGTTCGAACCTGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAAAACCGCTTTCTTGATATTAATCTCAGAGATGGAGTGATGATTCGCGAGAACGGATCAGCTGAGGGAAAAAGTAACACGAAATCCTATTCAAAAACGACTGGCAAGAAACCAAACTTAGTAACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACACTCTGATGGATATGGTTCATCATCTCCCACTCAATCAACTGGCATTGTAGAGGTATCCAGTGCACAGATTCAAAAGCTCAAGTATAAAGTTAGACCTGAGAGGCCATTCGACGAAGTCAAGCCTAAAGTAGATACCGGTTTGAGATCCCATAGCAATCCGAAAGAGAGATCCACGCCATTGGTAAAAAACGCTAAGAAGCGATTATCCATGCCTAACAATGTTGCAGACCCGGGTAGTCAAAATCAAAGGGCGAGAAATTCCAATAGAACTGCTGGCAAAGTGACCGTGACCAAGTCCGTCAACGACAAACCCAAGCCGATTGCAAGAGGTGACCCGAAATCTGCAAATCCCGGATCACAGAATTGA 1425 44.91 MDAVDLIFHSPPKTSSFPCSSNIFPGGFLAVGLFLANTIECTMGVSGKWFKALVSSKKSEKSQSSEHEENARTVTNKFWHRRKHSVDIDADKLEHEFNSNFTPFIEEANALSDPEAASIPSGSLQICDALRSRQNDIEEQAAIRIQTMFRSFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKIQQQLENQAREGWCDSVGSVEEIQVKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSEFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNTKSYSKTTGKKPNLVTDQSNLSSQKTAASHSDGYGSSSPTQSTGIVEVSSAQIQKLKYKVRPERPFDEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQRARNSNRTAGKVTVTKSVNDKPKPIARGDPKSANPGSQN 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4724208 4730402 - CmaCh11G009120.1 Cma11g00912 303421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00912 474 ProSiteProfiles IQ motif profile. 138 166 IPR000048 GO:0005515
Cma11g00912 474 MobiDBLite consensus disorder prediction 316 368 - -
Cma11g00912 474 ProSiteProfiles IQ motif profile. 162 189 IPR000048 GO:0005515
Cma11g00912 474 PANTHER IQ-DOMAIN 5-RELATED 32 435 - -
Cma11g00912 474 MobiDBLite consensus disorder prediction 426 450 - -
Cma11g00912 474 MobiDBLite consensus disorder prediction 317 368 - -
Cma11g00912 474 MobiDBLite consensus disorder prediction 390 404 - -
Cma11g00912 474 PANTHER IQ-DOMAIN 5-RELATED 32 435 - -
Cma11g00912 474 MobiDBLite consensus disorder prediction 390 474 - -
Cma11g00912 474 Pfam IQ calmodulin-binding motif 140 159 IPR000048 GO:0005515
Cma11g00912 474 Gene3D - 136 185 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00857 Cma11g00912 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00912 Cma-Chr11:4724208 Cma04g02600 Cma-Chr4:17780558 1.58E-51 dispersed
Cma10g00857 Cma-Chr10:4163007 Cma11g00912 Cma-Chr11:4724208 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00912 - - cmax:111495471 798.505