Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00930 ATGAGGAAATTAGGAGTATTGGTGCTGTTTTGGAGTGCATCGATACTTCTTTGGAACCGTACTCGTTGGCTTACAGAAGCAGCTCCGGCGGGTTCGGCGGTGACTCACTTGCCCGGCTTCACGGCCAGCGATTTTCCGTCCAAACACCATTCCGGGTATATAAATATCGACGGAGGTTCGAGTGGGAAGAGGCTGTTTTATTACTTTGTGACGTCGCAACGGAGCCCCGCCGCCGATCCGGTGGTTCTCTGGCTCAACGGCGGCCCTGGTTGCTCTAGCTTCGACGGCTTTGTTTATGAACACGGACCTTTCAATTTTGGAGAAGGAAATCCCAAGGGAACACTCCCTACCTTACATCTTAATCCTTACAGCTGGTCCAAGGTTTCAAATATTATATATTTGGATTCCCCAGCTGGTGTTGGCTTATCCTATTCCCCAAACGAGGCCAATTACATTACAGGAGATCTTCAAACGGCTTCTGATACACACATTTTTATTCTGAGATGGTTCGAGGAATTTCCAGAATTTCTTCAAAATCCATTTTACATAGCAGGAGAGTCCTTCGCAGGCATCTATGTCCCCACCCTTGCTTCTCAAGTAGTCCAAGGGCTTAAAAATGGGGCTGTGCCAATTATAAATTTCAAGGGTTACATGGTGGGGAATGGTGTGACGGACGAAAAGTTTGATGGCAATGCTCTCGTCCCTTTTGCACATGGAATGGCCCTAATCTCTGACGCTATGTTTCAGGAAGCTGAAGCTTCTTGTGGTGGAAATTACTACGACCCTCAAACGGAGGCTTGTTTTGACAAGCTTGACCGCGTTGACCAGGATTTGGAGAGGCTAAACGTATACGACATCTTGGAGCCATGTTTTCACATAGGAAACACGAGCCAAAGCTTGCCTACAAGTTTTCAACAGCTTGGGCAAACGGAGAAGCCTTTAGCCATAAGGAAGCGGATGTTTGGTCGGGCTTGGCCTTTTAGGGCGCCAGTGCGCGATGGGATCGTCCCTCTTTGGTCTGAACTAGCTGAGACCGACACCAAATCTCATGTACCTTGTCTGAATGATGAAGTAGCGACTATTTGGTTGAACGACGAGTCGGTGAGAGAAGCCATTCACGCCGAGCCGGAAAGTGTGGCAGGTCCATGGGAGCTCTGTACTCATAGAATAAGGTACAGTCACAATGCTGGAAGTATGATTCCTTATCATAAGAACCTTACTTCTCAAGGTTTTAGAGCTCTTATTTTCAGTGGAGACCATGATATGTGTGTGCCATACACTGGAAGCCAAGCATGGACTTCTTCACTTGGCTACAAAATTATTGATGAATGGAGGCCATGGTTCTCCAATGCCCAAGTTGCAGGGTATTTACAAGAATATGAACACAATCTCACTTTCCTTACCATAAAGGGAGCTGGACATACTGTACCAGAATACAAACCTAGAGAGGCATTAGATTTCTACACTCGATGTCAAAACTCGTTTACAACCCGCGAAAGGATTCTTCATCGGTTGCTTGCTTGTTTGTTGAATCTTCCGGTCGTTTTCCCCACTCAATCATTCCACCCCCCCTTTGGTCGTCTTCAAATCCGAAGTCGCTGTCTAAAGAGGAATTCATTCTGCCAAATTCTTAATTCATCTCCAATTTTGTTTCCTACTATTGGAGTCCCCATTTCCAGAATGGGGCCTTGCTTGTCTGTTGTATGTAAGAGGGCCATGGCTGGTTCCTCTGTATCTTCTGTGCTGAAAGCAAGTAAACTGAAAGACTCAGAAAATGGGCTGGAGTCCAAGGATTCTATGTTTGAGCAGCAGAGTGAAGAAGCAACAGTTCATCGAATTCCGGGTCGGATGTTCTTGAATGGATCCAGTGAAGTTGCCTCACTTTATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGCACTTTGGCTCAAGAACGGATACATTCTTCTGTGGAGTTTTTGATGGCCATGGTCCTAACGGTCATCTGGTCGCGAAAAGAGTGAGGGATTCTCTGCCCCTGAAACTGACTGCGCATTGGGAAGCTAATGCAAGCAATGAGGATATTTCAAAAGAGTTTGGTCATAAAACAGGTCTCAACAATGAAAATTCTGGGTTAGAAACTGATTGGAAGGAAGCTAGTTCTCCCCTTAAGCACCATGAAATTTCTGAAAATATGAAGGAATCATTTTTGAAGGCTTTTAAGATAATGGATGTGGAACTCAAAATGCAACCAAACATTGATTGCTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGATCGAGATCTTGTTATTGGAAATGTGGGGGACTCGCGAGCTGTGTTGGGTACCAGAGACAAGGATAATTGTCTTCAAGCAGTTCAGTTGACCATAGATCTCAAGCCAGATATTCCAGCTGAAGCAGAGAGAATTCTCCAATGCAAGGGTCGGGTATTTGCCCATGAGGATGAACCAGAAGTTGCTAGGGTATGGCTTCCAAACAATGATTCCCCTGGGCTGGCAATGGCACGATCTTTCGGCGACTTTTGCCTCAAGGACTTCGGTCTAATTTCTGTTCCTGAAATTTCGTATCGGTTTCTGACAGACGAAGACGAGTTTATAGTTTTAGCTACCGACGGAATTTGGGATGTTCTCTCAAACAAAGAGGTAGTCGACATTGTGGCATCGACCCCAGCTCGTTCTGCAGCTCAATCATTGGTTGAGTCTGCAACTAAAGCATGGAGGCGCAAGTTTCCTTTTTCCAACATTGACGACTGTGCTGTTGTGTGCCTCTTCCTCGACTCGAACTTGATGGTATCAGATATGAATGTTAAATCCGAGGAGGTTAGTTCAGCAGTTCAAGCTGAGACAGCCATGGTGGATGATGATGTCTCAGGCGCAGCTGGTCTACGGTGTTCGGAAATCGTGCAAACAGTAGGAGTTTCTACAAGAACGGTATGA 2967 45.84 MRKLGVLVLFWSASILLWNRTRWLTEAAPAGSAVTHLPGFTASDFPSKHHSGYINIDGGSSGKRLFYYFVTSQRSPAADPVVLWLNGGPGCSSFDGFVYEHGPFNFGEGNPKGTLPTLHLNPYSWSKVSNIIYLDSPAGVGLSYSPNEANYITGDLQTASDTHIFILRWFEEFPEFLQNPFYIAGESFAGIYVPTLASQVVQGLKNGAVPIINFKGYMVGNGVTDEKFDGNALVPFAHGMALISDAMFQEAEASCGGNYYDPQTEACFDKLDRVDQDLERLNVYDILEPCFHIGNTSQSLPTSFQQLGQTEKPLAIRKRMFGRAWPFRAPVRDGIVPLWSELAETDTKSHVPCLNDEVATIWLNDESVREAIHAEPESVAGPWELCTHRIRYSHNAGSMIPYHKNLTSQGFRALIFSGDHDMCVPYTGSQAWTSSLGYKIIDEWRPWFSNAQVAGYLQEYEHNLTFLTIKGAGHTVPEYKPREALDFYTRCQNSFTTRERILHRLLACLLNLPVVFPTQSFHPPFGRLQIRSRCLKRNSFCQILNSSPILFPTIGVPISRMGPCLSVVCKRAMAGSSVSSVLKASKLKDSENGLESKDSMFEQQSEEATVHRIPGRMFLNGSSEVASLYTQQGKKGMNQDAMIVWEHFGSRTDTFFCGVFDGHGPNGHLVAKRVRDSLPLKLTAHWEANASNEDISKEFGHKTGLNNENSGLETDWKEASSPLKHHEISENMKESFLKAFKIMDVELKMQPNIDCFCSGTTAVALVKQDRDLVIGNVGDSRAVLGTRDKDNCLQAVQLTIDLKPDIPAEAERILQCKGRVFAHEDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLTDEDEFIVLATDGIWDVLSNKEVVDIVASTPARSAAQSLVESATKAWRRKFPFSNIDDCAVVCLFLDSNLMVSDMNVKSEEVSSAVQAETAMVDDDVSGAAGLRCSEIVQTVGVSTRTV 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4884425 4892999 + CmaCh11G009300.1 Cma11g00930 303439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00930 988 MobiDBLite consensus disorder prediction 698 718 - -
Cma11g00930 988 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 491 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 SUPERFAMILY PP2C-like 623 936 IPR036457 -
Cma11g00930 988 Gene3D - 349 495 - -
Cma11g00930 988 CDD PP2Cc 625 935 IPR001932 -
Cma11g00930 988 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 PRINTS Carboxypeptidase C serine protease (S10) family signature 464 477 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 MobiDBLite consensus disorder prediction 702 716 - -
Cma11g00930 988 Pfam Serine carboxypeptidase 38 490 IPR001563 GO:0004185|GO:0006508
Cma11g00930 988 SUPERFAMILY alpha/beta-Hydrolases 36 491 IPR029058 -
Cma11g00930 988 ProSitePatterns Serine carboxypeptidases, histidine active site. 464 481 IPR033124 GO:0004185
Cma11g00930 988 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 20 24 491 - -
Cma11g00930 988 Pfam Protein phosphatase 2C 683 910 IPR001932 -
Cma11g00930 988 Gene3D alpha/beta hydrolase 27 320 IPR029058 -
Cma11g00930 988 ProSiteProfiles PPM-type phosphatase domain profile. 625 935 IPR001932 -
Cma11g00930 988 Gene3D - 621 937 IPR036457 -
Cma11g00930 988 SMART PP2C_4 617 933 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00869 Cma-Chr5:6071902 Cma11g00930 Cma-Chr11:4884425 1.21E-166 dispersed
Cma09g00299 Cma-Chr9:1226342 Cma11g00930 Cma-Chr11:4884425 5.19E-48 dispersed
Cma11g00930 Cma-Chr11:4884425 Cma17g01330 Cma-Chr17:8956352 0 dispersed
Cma11g00930 Cma-Chr11:4884425 Cma01g00483 Cma-Chr1:2450184 8.75E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00930 K16296 - cmax:111498595 849.351