Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00939 | ATGCTTGAAGATGGGAGTAGCTATGGCAGTGAGGATTCGTACTACAGGTTCACACCTCGTGGGGAGCTTCGGTTTGAAAATCAGGAAGGTGAAACGGATCATCGTCAAGGGTTCGAATCAGAGAAAACACTGATGGATTATGAATTGCTAGCTGATTTTCCCAAAGAGGATTGTTCTGTATTAGAACAATATGAACTGGGTTCATCCTCTACTGATAAGAACAATGTGGAAACCTGTCTTTCCTCTGTAACTCATAATCATGACATTGAGCAGCCGCCGCCGCCGCCGCCGCCGTTAGAAACAGAACACAAAGGGTCTTATGTTCCTGTCGGAATGCTAAAAACATCAGAAGATGGATACAACTGGAGAAAATACGGCCAGAAACAGGTGAAGGGCAGCGAATATCCAAGAAGCTATTACAAATGCACGCATCCAAATTGTATAGTAAAGAAGAAGGTGGAGCGATCGCTTGACGGTCAGATCACAGAGATCATATATACCGGCGCTCATAATCATTCTAAGCCGGACCCCACTCGCCGGGCTCTGCTTGGATCAGTGCTAGCTCCAGATGATGCTCCGGACACCGGCGAAGGCGGTGGAAGCCGCGCCAAACTTGAAGGTGGACTGCCATGGCGGAACAGCCCCTATGGGGTGAAGGATTGGAGCGTTGATGGGCTAGAAAGAACATCCTCTGTTTCAGCTGTGACAGAGCTTTCTGAGCCATTGTATGGGAAAACTGTTGGTGGGTTTGAATCCATTGAAACTCCCGAGCTTTCCTCCACTTTTGTTAGCCATGATGATGACGACGGCGGCGGCGGAGGAGGCGGAGGCAGCGGCGGTGGTGGAAACGATGATGATGAACTCACAAATCAGGGGAGTATTTCAGCTGATGATGCAGAGCCTGAGCTGAAAAGAAGGCGGAAAGAGGGGATTTCCATGGAGACAAGCTTGGGTTCGCGCTCTGTTCGTGAACAGAGAGTAGTAGTTCAAATCGAAACGGAGTTCGACATACTTGAAGATGGGTATCGGTGGAGGAAATATGGCCAAAAAGTTGTGAAAGGAAACCCAAATCCAAGGAGCTATTACAAGTGCACGAGTACAGGGTGTTCAGTAAGAAAGCATGTCGAGAGAGCATCGCATGATTTGAAATGTGTAATAACAACGTACGAAGGAAAGCACAATCATTTAGTGCCAGCAGCGAGGAACAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAGCACCGCGCAGGCCTCCTCTGCTGCTGCTACTCAGGCGGCGGCGGCGCCGACAAGAAAGTCTGAAACACAAATCCAAGATCTTTCCACACAGTTTTATCCGACACCTGAATTCAGCAGCCATGAGTATCAGCGGTCGTTTGGAACAGCGCCGCCATTTTGTCAGCTGAAGTTCCCTCCATTGCAGACCGCCTTCCCTGCTTTGGACTTCCCCATTTCGTTGCCATTGAGCCAAAATCTCTCGGCTTTTCAGGTGTTCTTGGCTGAGAGATTCCTCACACCAAAACAGGAGCATGAGGAGGATAATATCTATGCTTCTTTTCAGCTAAAAGATGGCTATTTGGGAATAGACCATTAA | 1605 | 48.91 | MLEDGSSYGSEDSYYRFTPRGELRFENQEGETDHRQGFESEKTLMDYELLADFPKEDCSVLEQYELGSSSTDKNNVETCLSSVTHNHDIEQPPPPPPPLETEHKGSYVPVGMLKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCIVKKKVERSLDGQITEIIYTGAHNHSKPDPTRRALLGSVLAPDDAPDTGEGGGSRAKLEGGLPWRNSPYGVKDWSVDGLERTSSVSAVTELSEPLYGKTVGGFESIETPELSSTFVSHDDDDGGGGGGGGSGGGGNDDDELTNQGSISADDAEPELKRRRKEGISMETSLGSRSVREQRVVVQIETEFDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCSVRKHVERASHDLKCVITTYEGKHNHLVPAARNSSSSSSSSSSSSSSSTAQASSAAATQAAAAPTRKSETQIQDLSTQFYPTPEFSSHEYQRSFGTAPPFCQLKFPPLQTAFPALDFPISLPLSQNLSAFQVFLAERFLTPKQEHEEDNIYASFQLKDGYLGIDH | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4927593 | 4930117 | + | CmaCh11G009390.1 | Cma11g00939 | 303448 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00939 | 534 | ProSiteProfiles | WRKY domain profile. | 111 | 175 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 23 | 517 | - | - | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 396 | 440 | - | - | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 260 | 322 | - | - | |
Cma11g00939 | 534 | SUPERFAMILY | WRKY DNA-binding domain | 114 | 175 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | Pfam | WRKY DNA -binding domain | 339 | 395 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | Pfam | WRKY DNA -binding domain | 117 | 172 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | ProSiteProfiles | WRKY domain profile. | 333 | 398 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 398 | 440 | - | - | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 187 | 208 | - | - | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cma11g00939 | 534 | Gene3D | WRKY domain | 325 | 391 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | Gene3D | WRKY domain | 111 | 176 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | MobiDBLite | consensus disorder prediction | 298 | 313 | - | - | |
Cma11g00939 | 534 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 23 | 517 | IPR044810 | GO:0003700 | |
Cma11g00939 | 534 | SUPERFAMILY | WRKY DNA-binding domain | 331 | 398 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | SMART | WRKY_cls | 338 | 397 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00939 | 534 | SMART | WRKY_cls | 116 | 174 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00939 | Cma-Chr11:4927593 | Cma16g00995 | Cma-Chr16:7656778 | 2.46E-92 | dispersed | |
Cma10g00833 | Cma-Chr10:3895566 | Cma11g00939 | Cma-Chr11:4927593 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35849 | PF03106 | WRKY | 5.10E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00939 | K18835 | - | csv:101206605 | 568.54 |