Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00939 ATGCTTGAAGATGGGAGTAGCTATGGCAGTGAGGATTCGTACTACAGGTTCACACCTCGTGGGGAGCTTCGGTTTGAAAATCAGGAAGGTGAAACGGATCATCGTCAAGGGTTCGAATCAGAGAAAACACTGATGGATTATGAATTGCTAGCTGATTTTCCCAAAGAGGATTGTTCTGTATTAGAACAATATGAACTGGGTTCATCCTCTACTGATAAGAACAATGTGGAAACCTGTCTTTCCTCTGTAACTCATAATCATGACATTGAGCAGCCGCCGCCGCCGCCGCCGCCGTTAGAAACAGAACACAAAGGGTCTTATGTTCCTGTCGGAATGCTAAAAACATCAGAAGATGGATACAACTGGAGAAAATACGGCCAGAAACAGGTGAAGGGCAGCGAATATCCAAGAAGCTATTACAAATGCACGCATCCAAATTGTATAGTAAAGAAGAAGGTGGAGCGATCGCTTGACGGTCAGATCACAGAGATCATATATACCGGCGCTCATAATCATTCTAAGCCGGACCCCACTCGCCGGGCTCTGCTTGGATCAGTGCTAGCTCCAGATGATGCTCCGGACACCGGCGAAGGCGGTGGAAGCCGCGCCAAACTTGAAGGTGGACTGCCATGGCGGAACAGCCCCTATGGGGTGAAGGATTGGAGCGTTGATGGGCTAGAAAGAACATCCTCTGTTTCAGCTGTGACAGAGCTTTCTGAGCCATTGTATGGGAAAACTGTTGGTGGGTTTGAATCCATTGAAACTCCCGAGCTTTCCTCCACTTTTGTTAGCCATGATGATGACGACGGCGGCGGCGGAGGAGGCGGAGGCAGCGGCGGTGGTGGAAACGATGATGATGAACTCACAAATCAGGGGAGTATTTCAGCTGATGATGCAGAGCCTGAGCTGAAAAGAAGGCGGAAAGAGGGGATTTCCATGGAGACAAGCTTGGGTTCGCGCTCTGTTCGTGAACAGAGAGTAGTAGTTCAAATCGAAACGGAGTTCGACATACTTGAAGATGGGTATCGGTGGAGGAAATATGGCCAAAAAGTTGTGAAAGGAAACCCAAATCCAAGGAGCTATTACAAGTGCACGAGTACAGGGTGTTCAGTAAGAAAGCATGTCGAGAGAGCATCGCATGATTTGAAATGTGTAATAACAACGTACGAAGGAAAGCACAATCATTTAGTGCCAGCAGCGAGGAACAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAGCACCGCGCAGGCCTCCTCTGCTGCTGCTACTCAGGCGGCGGCGGCGCCGACAAGAAAGTCTGAAACACAAATCCAAGATCTTTCCACACAGTTTTATCCGACACCTGAATTCAGCAGCCATGAGTATCAGCGGTCGTTTGGAACAGCGCCGCCATTTTGTCAGCTGAAGTTCCCTCCATTGCAGACCGCCTTCCCTGCTTTGGACTTCCCCATTTCGTTGCCATTGAGCCAAAATCTCTCGGCTTTTCAGGTGTTCTTGGCTGAGAGATTCCTCACACCAAAACAGGAGCATGAGGAGGATAATATCTATGCTTCTTTTCAGCTAAAAGATGGCTATTTGGGAATAGACCATTAA 1605 48.91 MLEDGSSYGSEDSYYRFTPRGELRFENQEGETDHRQGFESEKTLMDYELLADFPKEDCSVLEQYELGSSSTDKNNVETCLSSVTHNHDIEQPPPPPPPLETEHKGSYVPVGMLKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCIVKKKVERSLDGQITEIIYTGAHNHSKPDPTRRALLGSVLAPDDAPDTGEGGGSRAKLEGGLPWRNSPYGVKDWSVDGLERTSSVSAVTELSEPLYGKTVGGFESIETPELSSTFVSHDDDDGGGGGGGGSGGGGNDDDELTNQGSISADDAEPELKRRRKEGISMETSLGSRSVREQRVVVQIETEFDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCSVRKHVERASHDLKCVITTYEGKHNHLVPAARNSSSSSSSSSSSSSSSTAQASSAAATQAAAAPTRKSETQIQDLSTQFYPTPEFSSHEYQRSFGTAPPFCQLKFPPLQTAFPALDFPISLPLSQNLSAFQVFLAERFLTPKQEHEEDNIYASFQLKDGYLGIDH 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4927593 4930117 + CmaCh11G009390.1 Cma11g00939 303448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00939 534 ProSiteProfiles WRKY domain profile. 111 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 23 517 - -
Cma11g00939 534 MobiDBLite consensus disorder prediction 17 41 - -
Cma11g00939 534 MobiDBLite consensus disorder prediction 396 440 - -
Cma11g00939 534 MobiDBLite consensus disorder prediction 260 322 - -
Cma11g00939 534 SUPERFAMILY WRKY DNA-binding domain 114 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 Pfam WRKY DNA -binding domain 339 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 Pfam WRKY DNA -binding domain 117 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 ProSiteProfiles WRKY domain profile. 333 398 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 MobiDBLite consensus disorder prediction 398 440 - -
Cma11g00939 534 MobiDBLite consensus disorder prediction 187 208 - -
Cma11g00939 534 MobiDBLite consensus disorder prediction 1 41 - -
Cma11g00939 534 Gene3D WRKY domain 325 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 Gene3D WRKY domain 111 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 MobiDBLite consensus disorder prediction 298 313 - -
Cma11g00939 534 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 517 IPR044810 GO:0003700
Cma11g00939 534 SUPERFAMILY WRKY DNA-binding domain 331 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 SMART WRKY_cls 338 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00939 534 SMART WRKY_cls 116 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00939 Cma-Chr11:4927593 Cma16g00995 Cma-Chr16:7656778 2.46E-92 dispersed
Cma10g00833 Cma-Chr10:3895566 Cma11g00939 Cma-Chr11:4927593 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35849 PF03106 WRKY 5.10E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00939 K18835 - csv:101206605 568.54