Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00940 ATGAGGCTTGAAGTGGAAGAAAACGATGTCGATGACGTTCTTCTTCCTCCTTCCAACTTCTCCATGGTTGAGGATGGCATTTTCCGATCCGGTTTCCCTCAGCCGGCTAATTTCCCCTTCCTCAAGAACCTCAACCTCCGCTCCATCATCTATCTGTGTCCAGAACCCTATCCAGAGGAGAATTTGGAGTTTCTTAGAGCCAATAACATCAAGCTTTTTCAATTCAAAATCGAAGGAAAAAAGGAGCCTTTCGTTTCAATGCCCAAGGATGCTATTCTGGATGCCCTAAAAATCCTAATTGATGTTAGGAATCATCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCGCTGGTCGGTTGCCTGAGAAAGTTTCAGAACTGGTGTTTGACATCAGTGTTCGAGGAGTACCAGCGATTCGCAGGCATGAAGTCGAGGACGACTGACCTACAATTCATCGAGACGTTTGACATCAGTTTGCTAAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGTTACAGCCAAAGCAAGAGGAGGCTGGTCTACCGAGAAGAAAATTTGCAGAAACCCCAACCAACATCAGTTTAG 603 45.61 MRLEVEENDVDDVLLPPSNFSMVEDGIFRSGFPQPANFPFLKNLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGKKEPFVSMPKDAILDALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRTTDLQFIETFDISLLRQCVYSIIYQYQGYSQSKRRLVYREENLQKPQPTSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4935931 4938230 - CmaCh11G009400.1 Cma11g00940 303449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00940 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 160 IPR029021 -
Cma11g00940 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cma11g00940 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cma11g00940 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cma11g00940 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cma11g00940 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 9 183 - -
Cma11g00940 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Cma11g00940 200 Pfam Tyrosine phosphatase family 14 164 IPR004861 -
Cma11g00940 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 9 183 - -
Cma11g00940 200 CDD PFA-DSP_Siw14 14 160 - -
Cma11g00940 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cma11g00940 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00065 Cma-Chr2:304907 Cma11g00940 Cma-Chr11:4935931 3.92E-79 dispersed
Cma11g00940 Cma-Chr11:4935931 Cma20g00235 Cma-Chr20:1119634 2.00E-78 dispersed
Cma10g00831 Cma-Chr10:3888135 Cma11g00940 Cma-Chr11:4935931 4.02E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00940 K18045 - csv:101211082 353.599