Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00942 ATGGAATACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACGCCGTCCTTGCGCGAAGATGCACTCTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTCTGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGTACTACTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTATCCAACCCTACAATCGCCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCAAGTTATGCATCTTTAATTTTACCTCAAGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGTTTCATCATCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTCGGTGCCGTTTGTCGGTTTCATCATCCCAGAGAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATTGGCCTACCGTTACGTCCGGGAGAGCCTTTGTGCATCTTTTATTCGCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCGCATACAATCTCTCTGCAGCGTCAACGCCGAACGCCCCAGTTCAGCATTTGTTTGGGACGTCATCAGGAACTACTGCACTAAGTTTGTCATCTGAAGGGCTAGTCGAAGCAGGATCTGCAAAGCCGAGACGACTATCAATCACAGAGACACGAGAGATGTCATCTGATGATGAAAACATCGAGGCCGAGGGCTGA 1134 46.65 MEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTLQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSAASTPNAPVQHLFGTSSGTTALSLSSEGLVEAGSAKPRRLSITETREMSSDDENIEAEG 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4951691 4958831 + CmaCh11G009420.1 Cma11g00942 303451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00942 377 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Cma11g00942 377 Gene3D - 30 78 - -
Cma11g00942 377 SUPERFAMILY CCCH zinc finger 286 310 IPR036855 GO:0046872
Cma11g00942 377 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Cma11g00942 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 78 - -
Cma11g00942 377 PANTHER PROTEIN PHOSPHATASE RELATED 229 376 - -
Cma11g00942 377 PANTHER PROTEIN PHOSPHATASE RELATED 79 231 - -
Cma11g00942 377 MobiDBLite consensus disorder prediction 217 237 - -
Cma11g00942 377 Gene3D - 226 312 - -
Cma11g00942 377 Gene3D - 79 154 - -
Cma11g00942 377 SUPERFAMILY CCCH zinc finger 119 145 IPR036855 GO:0046872
Cma11g00942 377 MobiDBLite consensus disorder prediction 217 234 - -
Cma11g00942 377 ProSiteProfiles Zinc finger C3H1-type profile. 79 99 IPR000571 GO:0046872
Cma11g00942 377 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Cma11g00942 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 98 IPR000571 GO:0046872
Cma11g00942 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 285 310 IPR000571 GO:0046872
Cma11g00942 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Cma11g00942 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 144 IPR000571 GO:0046872
Cma11g00942 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 264 IPR000571 GO:0046872
Cma11g00942 377 PANTHER PROTEIN PHOSPHATASE RELATED 10 78 - -
Cma11g00942 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 229 376 - -
Cma11g00942 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 79 231 - -
Cma11g00942 377 ProSiteProfiles Zinc finger C3H1-type profile. 237 265 IPR000571 GO:0046872
Cma11g00942 377 SUPERFAMILY CCCH zinc finger 241 266 IPR036855 GO:0046872
Cma11g00942 377 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Cma11g00942 377 SMART c3hfinal6 237 264 IPR000571 GO:0046872
Cma11g00942 377 SMART c3hfinal6 76 98 IPR000571 GO:0046872
Cma11g00942 377 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Cma11g00942 377 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Cma11g00942 377 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00942 Cma-Chr11:4951691 Cma14g01634 Cma-Chr14:12230592 6.49E-86 dispersed
Cma10g00830 Cma-Chr10:3873704 Cma11g00942 Cma-Chr11:4951691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35850 PF00642 zf-CCCH 2.50E-10 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00942 - - csv:101221929 746.503