Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00972 | ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACGGAGGATGAGATCCTTAAAGCTGCGGTGATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCACTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACACCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGCGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAAACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCTATTAGAGATGAGTTACATATCAATGAAGACACGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTGCTTTATTAGAGCATGATAATTTGAAGTACCCAATCGATGAAAAGGTCAGCAAGGAGAAAAAGAAAGGTTCCAAGCGCACAGGAAATAGACCTGCTGTGGCCATCCCTACCATAGATGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTAAAAAGCAAGAGATGTTAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGGAACCTTTTTGCGGATTTGGAAAAGATGACGAAAATCATGGATGAGCGCAAGGCACAGGCACTAAAGGAAGAAGAAATTGCAGCGGAGAACCGTGCTCTTCAGTTGGCCGAGGCTGAGGCTAATCGAACGGTAGGAGAAAATGCTGATAGTTCTGAAGCTGTGTCTGCGTTAGCAGTTGATGGTGAAAATTCTATGCCTCCCAATGAATTAACGGGTGAACAACAAAACTCTTCCTTGGGACATGAACATGAAGCTTCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGTTGCAGCGAGCTCGGATATTGGTTTACCTGATGACAAACTACCTTCTGCAGTGGCAGAGAATGATGCATCATCATCTGAAAAGGCTTTCGATGATTCTGATAAGAGTCAAACCATCAACGTTCCTTCACAAGAACTTGTGGTCCCTCCTGCTAATGGCACTCCAGACGTGGCCGTTACAGTGGAAAATAAGATCAGCAATGATTTGGTTGATGGAACTGCTCCTACCGAAAATGCTGAATGTAGTACCGATATTGTCAAGGAAGGTAAAGATGTTGAAACTCAGCAACCTGTGATCGAAGCTGGAAACTCGGATGTGAATTCGACTAATCTGGATTCTTCTAATAATGATGTCGTAGAACTCCCTCGTGGCGACGAGGAAGCAACGGAATCAAATGTGTAG | 3072 | 44.82 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDTDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNLKYPIDEKVSKEKKKGSKRTGNRPAVAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALKKQEMLAASHRISGIWEEVQKQKELERTLQLRYGNLFADLEKMTKIMDERKAQALKEEEIAAENRALQLAEAEANRTVGENADSSEAVSALAVDGENSMPPNELTGEQQNSSLGHEHEASNAMDIDAEKESVAASSDIGLPDDKLPSAVAENDASSSEKAFDDSDKSQTINVPSQELVVPPANGTPDVAVTVENKISNDLVDGTAPTENAECSTDIVKEGKDVETQQPVIEAGNSDVNSTNLDSSNNDVVELPRGDEEATESNV | 1023 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5168264 | 5178954 | - | CmaCh11G009720.1 | Cma11g00972 | 303481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Cma11g00972 | 1023 | PANTHER | - | 1 | 912 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 889 | 928 | - | - | |
Cma11g00972 | 1023 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Cma11g00972 | 1023 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 912 | - | - | |
Cma11g00972 | 1023 | Coils | Coil | 167 | 187 | - | - | |
Cma11g00972 | 1023 | SMART | sant | 6 | 55 | IPR001005 | - | |
Cma11g00972 | 1023 | SMART | sant | 58 | 105 | IPR001005 | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - | |
Cma11g00972 | 1023 | Pfam | pre-mRNA splicing factor component | 407 | 657 | IPR021786 | - | |
Cma11g00972 | 1023 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Cma11g00972 | 1023 | Coils | Coil | 811 | 834 | - | - | |
Cma11g00972 | 1023 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 1009 | 1023 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 987 | 1007 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
Cma11g00972 | 1023 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 980 | 1023 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 381 | 425 | - | - | |
Cma11g00972 | 1023 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Cma11g00972 | 1023 | CDD | SANT_CDC5_II | 55 | 106 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 213 | 234 | - | - | |
Cma11g00972 | 1023 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 860 | 876 | - | - | |
Cma11g00972 | 1023 | Gene3D | - | 60 | 114 | - | - | |
Cma11g00972 | 1023 | Gene3D | - | 5 | 59 | - | - | |
Cma11g00972 | 1023 | MobiDBLite | consensus disorder prediction | 854 | 877 | - | - | |
Cma11g00972 | 1023 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00972 | Cma-Chr11:5168264 | Cma05g00602 | Cma-Chr5:3011623 | 8.84E-11 | dispersed | |
Cma10g01018 | Cma-Chr10:5439947 | Cma11g00972 | Cma-Chr11:5168264 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35852 | PF11831 | Myb_Cef | 3.20E-58 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00972 | K12860 | - | csv:101206265 | 1682.15 |