Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00972 ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACGGAGGATGAGATCCTTAAAGCTGCGGTGATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCACTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACACCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGCGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAAACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCTATTAGAGATGAGTTACATATCAATGAAGACACGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTGCTTTATTAGAGCATGATAATTTGAAGTACCCAATCGATGAAAAGGTCAGCAAGGAGAAAAAGAAAGGTTCCAAGCGCACAGGAAATAGACCTGCTGTGGCCATCCCTACCATAGATGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTAAAAAGCAAGAGATGTTAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGGAACCTTTTTGCGGATTTGGAAAAGATGACGAAAATCATGGATGAGCGCAAGGCACAGGCACTAAAGGAAGAAGAAATTGCAGCGGAGAACCGTGCTCTTCAGTTGGCCGAGGCTGAGGCTAATCGAACGGTAGGAGAAAATGCTGATAGTTCTGAAGCTGTGTCTGCGTTAGCAGTTGATGGTGAAAATTCTATGCCTCCCAATGAATTAACGGGTGAACAACAAAACTCTTCCTTGGGACATGAACATGAAGCTTCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGTTGCAGCGAGCTCGGATATTGGTTTACCTGATGACAAACTACCTTCTGCAGTGGCAGAGAATGATGCATCATCATCTGAAAAGGCTTTCGATGATTCTGATAAGAGTCAAACCATCAACGTTCCTTCACAAGAACTTGTGGTCCCTCCTGCTAATGGCACTCCAGACGTGGCCGTTACAGTGGAAAATAAGATCAGCAATGATTTGGTTGATGGAACTGCTCCTACCGAAAATGCTGAATGTAGTACCGATATTGTCAAGGAAGGTAAAGATGTTGAAACTCAGCAACCTGTGATCGAAGCTGGAAACTCGGATGTGAATTCGACTAATCTGGATTCTTCTAATAATGATGTCGTAGAACTCCCTCGTGGCGACGAGGAAGCAACGGAATCAAATGTGTAG 3072 44.82 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDTDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNLKYPIDEKVSKEKKKGSKRTGNRPAVAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALKKQEMLAASHRISGIWEEVQKQKELERTLQLRYGNLFADLEKMTKIMDERKAQALKEEEIAAENRALQLAEAEANRTVGENADSSEAVSALAVDGENSMPPNELTGEQQNSSLGHEHEASNAMDIDAEKESVAASSDIGLPDDKLPSAVAENDASSSEKAFDDSDKSQTINVPSQELVVPPANGTPDVAVTVENKISNDLVDGTAPTENAECSTDIVKEGKDVETQQPVIEAGNSDVNSTNLDSSNNDVVELPRGDEEATESNV 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5168264 5178954 - CmaCh11G009720.1 Cma11g00972 303481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00972 1023 MobiDBLite consensus disorder prediction 157 176 - -
Cma11g00972 1023 PANTHER - 1 912 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 889 928 - -
Cma11g00972 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cma11g00972 1023 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 912 - -
Cma11g00972 1023 Coils Coil 167 187 - -
Cma11g00972 1023 SMART sant 6 55 IPR001005 -
Cma11g00972 1023 SMART sant 58 105 IPR001005 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 113 150 - -
Cma11g00972 1023 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cma11g00972 1023 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cma11g00972 1023 Coils Coil 811 834 - -
Cma11g00972 1023 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 1009 1023 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 987 1007 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 400 414 - -
Cma11g00972 1023 CDD SANT 10 53 IPR001005 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 980 1023 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 381 425 - -
Cma11g00972 1023 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cma11g00972 1023 CDD SANT_CDC5_II 55 106 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 213 234 - -
Cma11g00972 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 860 876 - -
Cma11g00972 1023 Gene3D - 60 114 - -
Cma11g00972 1023 Gene3D - 5 59 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 854 877 - -
Cma11g00972 1023 Pfam Myb-like DNA-binding domain 10 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00972 Cma-Chr11:5168264 Cma05g00602 Cma-Chr5:3011623 8.84E-11 dispersed
Cma10g01018 Cma-Chr10:5439947 Cma11g00972 Cma-Chr11:5168264 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35852 PF11831 Myb_Cef 3.20E-58 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00972 K12860 - csv:101206265 1682.15