Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00972 ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACGGAGGATGAGATCCTTAAAGCTGCGGTGATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCACTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACACCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGCGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAAACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCTATTAGAGATGAGTTACATATCAATGAAGACACGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTGCTTTATTAGAGCATGATAATTTGAAGTACCCAATCGATGAAAAGGTCAGCAAGGAGAAAAAGAAAGGTTCCAAGCGCACAGGAAATAGACCTGCTGTGGCCATCCCTACCATAGATGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTAAAAAGCAAGAGATGTTAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGGAACCTTTTTGCGGATTTGGAAAAGATGACGAAAATCATGGATGAGCGCAAGGCACAGGCACTAAAGGAAGAAGAAATTGCAGCGGAGAACCGTGCTCTTCAGTTGGCCGAGGCTGAGGCTAATCGAACGGTAGGAGAAAATGCTGATAGTTCTGAAGCTGTGTCTGCGTTAGCAGTTGATGGTGAAAATTCTATGCCTCCCAATGAATTAACGGGTGAACAACAAAACTCTTCCTTGGGACATGAACATGAAGCTTCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGTTGCAGCGAGCTCGGATATTGGTTTACCTGATGACAAACTACCTTCTGCAGTGGCAGAGAATGATGCATCATCATCTGAAAAGGCTTTCGATGATTCTGATAAGAGTCAAACCATCAACGTTCCTTCACAAGAACTTGTGGTCCCTCCTGCTAATGGCACTCCAGACGTGGCCGTTACAGTGGAAAATAAGATCAGCAATGATTTGGTTGATGGAACTGCTCCTACCGAAAATGCTGAATGTAGTACCGATATTGTCAAGGAAGGTAAAGATGTTGAAACTCAGCAACCTGTGATCGAAGCTGGAAACTCGGATGTGAATTCGACTAATCTGGATTCTTCTAATAATGATGTCGTAGAACTCCCTCGTGGCGACGAGGAAGCAACGGAATCAAATGTGTAG 3072 44.82 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDTDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNLKYPIDEKVSKEKKKGSKRTGNRPAVAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALKKQEMLAASHRISGIWEEVQKQKELERTLQLRYGNLFADLEKMTKIMDERKAQALKEEEIAAENRALQLAEAEANRTVGENADSSEAVSALAVDGENSMPPNELTGEQQNSSLGHEHEASNAMDIDAEKESVAASSDIGLPDDKLPSAVAENDASSSEKAFDDSDKSQTINVPSQELVVPPANGTPDVAVTVENKISNDLVDGTAPTENAECSTDIVKEGKDVETQQPVIEAGNSDVNSTNLDSSNNDVVELPRGDEEATESNV 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5168264 5178954 - CmaCh11G009720.1 Cma11g00972 303481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00972 1023 MobiDBLite consensus disorder prediction 157 176 - -
Cma11g00972 1023 PANTHER - 1 912 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 889 928 - -
Cma11g00972 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cma11g00972 1023 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 912 - -
Cma11g00972 1023 Coils Coil 167 187 - -
Cma11g00972 1023 SMART sant 6 55 IPR001005 -
Cma11g00972 1023 SMART sant 58 105 IPR001005 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 113 150 - -
Cma11g00972 1023 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cma11g00972 1023 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cma11g00972 1023 Coils Coil 811 834 - -
Cma11g00972 1023 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 1009 1023 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 987 1007 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 400 414 - -
Cma11g00972 1023 CDD SANT 10 53 IPR001005 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 980 1023 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 381 425 - -
Cma11g00972 1023 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cma11g00972 1023 CDD SANT_CDC5_II 55 106 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 213 234 - -
Cma11g00972 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 860 876 - -
Cma11g00972 1023 Gene3D - 60 114 - -
Cma11g00972 1023 Gene3D - 5 59 - -
Cma11g00972 1023 MobiDBLite consensus disorder prediction 854 877 - -
Cma11g00972 1023 Pfam Myb-like DNA-binding domain 10 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00972 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1682.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00972 Cma-Chr11:5168264 Cma05g00602 Cma-Chr5:3011623 8.84E-11 dispersed
Cma10g01018 Cma-Chr10:5439947 Cma11g00972 Cma-Chr11:5168264 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g604 . . Bda07g01179 . . Bpe09g00664 . . . . . . . Car12g00806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g00972 . . Cpe04g00013 Cpe05g00838 . . . . . . . . . . . . . . . Csa01g03419 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35852 PF11831 Myb_Cef 3.20E-58 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00972 Cma_Chr11 FPKM 21.951021 23.929766 23.260792 24.366688 22.605232 23.157549 22.405605 67.157036 67.247208 63.746479