Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00986 | ATGGAAGATTCCCCCCAATCAGCCGGTTATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGAATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG | 552 | 55.43 | MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5246207 | 5246758 | - | CmaCh11G009860.1 | Cma11g00986 | 303495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00986 | 183 | PANTHER | TIM23 | 1 | 183 | IPR045238 | GO:0022857 | |
| Cma11g00986 | 183 | PANTHER | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3 | 1 | 183 | - | - | |
| Cma11g00986 | 183 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 57 | 165 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g01008 | Cma-Chr10:5260986 | Cma11g00986 | Cma-Chr11:5246207 | 1.92E-102 | dispersed | |
| Cma11g00986 | Cma-Chr11:5246207 | Cma17g00711 | Cma-Chr17:5874218 | 9.37E-72 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00986 | K17794 | - | csv:101211511 | 309.301 |