Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00990 ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGAGGCGGCGATGGGTTGAGAGGGATAGCGGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGGCAAGAGAGGTTTAGAGATGAACTTAATAACAACAATAATAATAGTAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCAAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGCGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG 1008 50.6 MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5277672 5283100 + CmaCh11G009900.1 Cma11g00990 303499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00990 335 Gene3D - 173 230 IPR036638 GO:0046983
Cma11g00990 335 MobiDBLite consensus disorder prediction 135 184 - -
Cma11g00990 335 Pfam Helix-loop-helix DNA-binding domain 185 229 IPR011598 GO:0046983
Cma11g00990 335 SMART finulus 186 235 IPR011598 GO:0046983
Cma11g00990 335 MobiDBLite consensus disorder prediction 89 117 - -
Cma11g00990 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Cma11g00990 335 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 324 - -
Cma11g00990 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 239 IPR036638 GO:0046983
Cma11g00990 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00303 Cma-Chr8:1736157 Cma11g00990 Cma-Chr11:5277672 2.07E-35 dispersed
Cma11g00990 Cma-Chr11:5277672 Cma12g01153 Cma-Chr12:9092596 2.01E-57 dispersed
Cma11g00990 Cma-Chr11:5277672 Cma17g01213 Cma-Chr17:8381348 2.00E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35856 PF00010 HLH 7.50E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00990 - - cmax:111465659 519.62