Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00990 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGAGGCGGCGATGGGTTGAGAGGGATAGCGGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGGCAAGAGAGGTTTAGAGATGAACTTAATAACAACAATAATAATAGTAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCAAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGCGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG | 1008 | 50.6 | MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5277672 | 5283100 | + | CmaCh11G009900.1 | Cma11g00990 | 303499 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00990 | 335 | Gene3D | - | 173 | 230 | IPR036638 | GO:0046983 | |
Cma11g00990 | 335 | MobiDBLite | consensus disorder prediction | 135 | 184 | - | - | |
Cma11g00990 | 335 | Pfam | Helix-loop-helix DNA-binding domain | 185 | 229 | IPR011598 | GO:0046983 | |
Cma11g00990 | 335 | SMART | finulus | 186 | 235 | IPR011598 | GO:0046983 | |
Cma11g00990 | 335 | MobiDBLite | consensus disorder prediction | 89 | 117 | - | - | |
Cma11g00990 | 335 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 180 | 229 | IPR011598 | GO:0046983 | |
Cma11g00990 | 335 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 324 | - | - | |
Cma11g00990 | 335 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 178 | 239 | IPR036638 | GO:0046983 | |
Cma11g00990 | 335 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 324 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00303 | Cma-Chr8:1736157 | Cma11g00990 | Cma-Chr11:5277672 | 2.07E-35 | dispersed | |
Cma11g00990 | Cma-Chr11:5277672 | Cma12g01153 | Cma-Chr12:9092596 | 2.01E-57 | dispersed | |
Cma11g00990 | Cma-Chr11:5277672 | Cma17g01213 | Cma-Chr17:8381348 | 2.00E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35856 | PF00010 | HLH | 7.50E-08 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00990 | - | - | cmax:111465659 | 519.62 |