Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00994 ATGAAACATATTTTCAAGAAGTTTCATATTGGAAGCAATCACGAGCCGAATCGGCCCAATGAGAATCCGTTGCCTGGAGCAGCGTCGTCGTCAGATAATCGTCCTGCAACTGCTCCGGGGCAGATTTCCGGCAACTCTACGTCGAGTCCTTCGTCGTCGCCGTCGCCGTCTCCGTCGCTGGCAACAACTCCCCCAGTGGGCGGAAGCACGGCTTCGGTTTCGGTAGCTCCTAATCGGTCTGACTACTTTTCTTCAGAGGAAGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCCGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCAACACTTTTGAGCTTGGGAAATCATCGGATTGATTCCACTTCCAGGGACCAGGTAGATGCTGCCGAGGCGCTTTCGCGGCAATATTGGGAATATAATCTCCTTGACTATGGAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAACAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTAATGGTCAATATGACTGTTGATTCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTGAGAGTTTTGGTTCAGAGGCTTGCTGAGCTCATTATGGGACACATGGGCGGGCCTGTAAAGGACGCCAATTTTATGCTAGCTAGGTGGATGGAAAGAAGCACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCATTGCTTTTCAAGGTGTTAGCTGACGGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATCATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTCGATCTAATGGCAGCTCCTGGAACGCTTATACCAGCAGATGTATTAAATGCAAAGGACACCACTATGTTGAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTCCACTACTCTAATGATGTTGAAATTTCTTCCACGAAACCAACACCATCACTTGAGGAAAGCAGCAGTCAAAACTATGAAGCAGAGGCCAGCTCACTGGTGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCCTCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGTCCATTCAGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATCCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAGATAAAAGGAACTGGAAAAAGTTTCATTCTTAATAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTATCGGGCATCCTCCTGTACCCTTGTGGAAAAATCGAGTTGCATTCAATGCTGTTCCCAAGAAAAAAGAGTACGATTATATGGAGGGTCGTCTTCCAAGAATTAATTGTGGATATAATGATCATAATATGGCATCATCTTCTTCTGCCAACTCTACAGTCTCTGAAAGTGTCAGCCTTTGTGGTTCAGGAACATCCATTGAATCAAATGTATCAATTACAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGCACTCTCGGTCAACATCTGCCATGATTGAGCCTAATATTTTGCCTTCGATTGATGAACAGAACAGAAAGCAGAATGGAAAACATTCTGGAAGTACAGACTTGCAGGATAAAAATGTTGATACTGTTGATGGATGCGATAGTTTAATCAAATTTGATAATCGTAGAAAGTTCACATATGACAGATCTATTGGAACCAATTTGATATCGAAGGATATGAGAAGTCCCAGCCCATCAATTGATCCAAGTGCGAATAGGTTTGAGAAAGTTTATGATGATGTGGATGTAGGCCAATGTGAAATACAATGGGAGGACCTCATTATCGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACAATGCTGATTGGAATGGCACAGAGGTTGCGGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGACAGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTCACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCATCGCCCACATTGTCAAATTGATGAAAAACGCAGAATAAAAATGGCCCTTGATGTGGCTAAGGGCATGAATTGCTTGCATACAAGTCATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCGCGCCTGAAGCACCACACATTTTTGTCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAGGTTCTCCGGAATGAGCCTTCAAATGAAAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGACTACCTTGGAGTGGTATGAATCCTATGCAAGTTGTTGGTGCAGTCGGATTCCAGAATCGACGACTCGAAATACCCAAGGAAGTAGATCCCGCAGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGGCCATCATTTGCACAATTAGCCAATTTTCTTAAGCCTCTGCAGCAACTCGTCCTGCCACCGCATTCAGACCAGCCGAGTTCATCGATGCTGCAAGAGATTTCTGTAAATTCTACACCTTGA 2841 43.72 MKHIFKKFHIGSNHEPNRPNENPLPGAASSSDNRPATAPGQISGNSTSSPSSSPSPSPSLATTPPVGGSTASVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQVDAAEALSRQYWEYNLLDYGEKVVNGFYDVLSTDSTVQGKIPSLSDIEASFGSSGFEVVMVNMTVDSALEELVQIAQCIADCPGTEVRVLVQRLAELIMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADGIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLIPADVLNAKDTTMLKPYNPKVSKISSLHYSNDVEISSTKPTPSLEESSSQNYEAEASSLVDGKLGYGRTESVPSSSGTGTSRYKGVHSGDSNVRLNVNVVPFGQSSEDPKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTIGHPPVPLWKNRVAFNAVPKKKEYDYMEGRLPRINCGYNDHNMASSSSANSTVSESVSLCGSGTSIESNVSITSAEVGSSSSYMHSRSTSAMIEPNILPSIDEQNRKQNGKHSGSTDLQDKNVDTVDGCDSLIKFDNRRKFTYDRSIGTNLISKDMRSPSPSIDPSANRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYNADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVAKGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPAVARIIWECWQTDPNLRPSFAQLANFLKPLQQLVLPPHSDQPSSSMLQEISVNSTP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5353144 5362769 + CmaCh11G009940.1 Cma11g00994 303503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00994 946 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Cma11g00994 946 MobiDBLite consensus disorder prediction 366 387 - -
Cma11g00994 946 PRINTS Tyrosine kinase catalytic domain signature 739 752 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 PRINTS Tyrosine kinase catalytic domain signature 778 796 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 PRINTS Tyrosine kinase catalytic domain signature 825 835 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 PRINTS Tyrosine kinase catalytic domain signature 844 866 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 PRINTS Tyrosine kinase catalytic domain signature 888 910 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 ProSiteProfiles Protein kinase domain profile. 665 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00994 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 73 413 - -
Cma11g00994 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 404 939 - -
Cma11g00994 946 CDD STKc_MAP3K-like 671 917 - -
Cma11g00994 946 SUPERFAMILY Protein kinase-like (PK-like) 656 936 IPR011009 -
Cma11g00994 946 SMART serkin_6 665 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00994 946 MobiDBLite consensus disorder prediction 400 419 - -
Cma11g00994 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Cma11g00994 946 MobiDBLite consensus disorder prediction 15 73 - -
Cma11g00994 946 MobiDBLite consensus disorder prediction 1 73 - -
Cma11g00994 946 Pfam Protein tyrosine and serine/threonine kinase 666 917 IPR001245 GO:0004672|GO:0006468
Cma11g00994 946 Gene3D Transferase(Phosphotransferase) domain 1 744 925 - -
Cma11g00994 946 PANTHER SERINE-THREONINE PROTEIN KINASE 73 413 - -
Cma11g00994 946 PANTHER SERINE-THREONINE PROTEIN KINASE 404 939 - -
Cma11g00994 946 Pfam Ethylene-responsive protein kinase Le-CTR1 137 332 - -
Cma11g00994 946 MobiDBLite consensus disorder prediction 366 419 - -
Cma11g00994 946 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Cma11g00994 946 MobiDBLite consensus disorder prediction 578 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01739 Cma-Chr1:11761896 Cma11g00994 Cma-Chr11:5353144 6.20E-72 dispersed
Cma10g01052 Cma-Chr10:6473971 Cma11g00994 Cma-Chr11:5353144 0 dispersed
Cma11g00994 Cma-Chr11:5353144 Cma13g00996 Cma-Chr13:7694080 5.51E-46 dispersed
Cma14g00279 Cma-Chr14:1176406 Cma11g00994 Cma-Chr11:5353144 2.68E-36 dispersed
Cma11g00994 Cma-Chr11:5353144 Cma09g00335 Cma-Chr9:1377586 2.91E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68903 PF07714 PK_Tyr_Ser-Thr 6.50E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00994 - - cpep:111793388 1835.85