Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01005 | ATGGAAACAATTGATTCAATTACTGGTTTCTCTAATCTTCTTCAACCTCCAGATTTCTCTCAGTATGTTGAAATTGATCCGACTGGCAGATATGGAAGATATAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCGTTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAATCATTGAAGCATAAGAACATTATGAAATTTTATACCTCATGGGTCGATACTGCAAATAGGAACATCAACTTTGTTACTGAAATGTTCACCTCTGGGACTTTGAGGCAATATCGGCTAAAACATAGGAGAGTTAACATTAGAGCAGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAGAACCCCCCTGTGATCCACAGAGATCTCAAGTGCGATAACATTTTAGTTAATGGTAATCAAGGAGAAATTAAAATTGGAGATCTTGGTCTCGCTGCTATTCTCCGGAAATCGCATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCTTATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGAAAAAAACCAGATGCCTTATATAAAGTGAAGGATCCGAGCATGCGGCAATTTGTTGAGAAATGCTTGGCACCAGTCTCTTGTAGACCTTCAGCAAGGGAACTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGTAAGTTACAACTTTCAGGATGTCCGAGAGAACTCAACGGTATTGCTTTTACTACAGCACACCCTTTCCTTGAACGACAAGGAAGTTTCAGCTCGATTAATTACTGTTTGGAGGCCTCAGATGAATGGAGGTGTCGTTCGGTTCAGACTGAACCTGATGGGTTTGAACTTTTTGAGAATGATGATGATGACCAATTGGAAAACCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTCTTAGACTTAGGATTGCAGATAAAGAAGGACGGATTCGAAACATTTACTTCCCGTTTGACACCAAGAATGATACAGCATTAACGGTTGCTACTGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACCTGAGTGGAAGTCGGGGCCTGGAATAGATGAAACACCTCGTATCTCTTACGATGGTGGCTGTCAAAGCCACGACGCTGCTAACCATTCATGTGATCATAGTTTGATAGGGAATAACCAAAATGGAGAAAAACTCTATCAGATTTTAAACTTGAGCACAGTTGAACGTGCTTCGGTGCACGAACTTTTCAAGCAGGACTCCCTCAAAGCTGATCCGCCTCCAGAACCTGTGGTAGAGAGTCCACCAAAAGTGTCAAGCCAGCATTATCAGCCAAACTCAGTCCTCCTTGAAAATCCAGCTCTTGGTTCTCATAGTTTTAGGCATAGCCATTCTAATCAAAATTTCAAGAAAATAGGCCAGTCGATCATTGTTGGGGATGACAAAGAAAAAATACTAGATAAAAATGCCATTGCAAGAACTTCACTCAGAAGCTTGCTGGGTTCCCGATCGCTGTCAACAGTTCCGTCCTATCGTGAAGATAAATTTGCATCCCAAATTCATCGAGAAATTAGATGGCTATGGAATTGA | 1842 | 40.55 | METIDSITGFSNLLQPPDFSQYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKSLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNILVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPDALYKVKDPSMRQFVEKCLAPVSCRPSARELLSDPFLQIDDCESKLQLSGCPRELNGIAFTTAHPFLERQGSFSSINYCLEASDEWRCRSVQTEPDGFELFENDDDDQLENLDNSIKGKIREDGSIVLRLRIADKEGRIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKSGPGIDETPRISYDGGCQSHDAANHSCDHSLIGNNQNGEKLYQILNLSTVERASVHELFKQDSLKADPPPEPVVESPPKVSSQHYQPNSVLLENPALGSHSFRHSHSNQNFKKIGQSIIVGDDKEKILDKNAIARTSLRSLLGSRSLSTVPSYREDKFASQIHREIRWLWN | 613 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5426778 | 5430726 | - | CmaCh11G010050.1 | Cma11g01005 | 303514 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01005 | 613 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 295 | - | - | |
Cma11g01005 | 613 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 156 | 168 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01005 | 613 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 378 | 433 | IPR024678 | GO:0004674|GO:0005524 | |
Cma11g01005 | 613 | Pfam | Protein kinase domain | 35 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01005 | 613 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1 | 14 | 613 | - | - | |
Cma11g01005 | 613 | ProSiteProfiles | Protein kinase domain profile. | 32 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01005 | 613 | MobiDBLite | consensus disorder prediction | 504 | 526 | - | - | |
Cma11g01005 | 613 | Gene3D | - | 376 | 444 | - | - | |
Cma11g01005 | 613 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 113 | - | - | |
Cma11g01005 | 613 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 14 | 613 | - | - | |
Cma11g01005 | 613 | CDD | STKc_WNK | 30 | 289 | - | - | |
Cma11g01005 | 613 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 290 | IPR011009 | - | |
Cma11g01005 | 613 | SMART | serkin_6 | 32 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g01144 | Cma-Chr8:7057164 | Cma11g01005 | Cma-Chr11:5426778 | 3.13E-75 | dispersed | |
Cma11g01005 | Cma-Chr11:5426778 | Cma17g00238 | Cma-Chr17:1210638 | 0 | dispersed | |
Cma11g01005 | Cma-Chr11:5426778 | Cma12g01107 | Cma-Chr12:8766135 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68904 | PF00069 | Pkinase | 1.30E-49 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01005 | K08867 | - | csv:101222641 | 986.482 |