Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01005 ATGGAAACAATTGATTCAATTACTGGTTTCTCTAATCTTCTTCAACCTCCAGATTTCTCTCAGTATGTTGAAATTGATCCGACTGGCAGATATGGAAGATATAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCGTTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAATCATTGAAGCATAAGAACATTATGAAATTTTATACCTCATGGGTCGATACTGCAAATAGGAACATCAACTTTGTTACTGAAATGTTCACCTCTGGGACTTTGAGGCAATATCGGCTAAAACATAGGAGAGTTAACATTAGAGCAGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAGAACCCCCCTGTGATCCACAGAGATCTCAAGTGCGATAACATTTTAGTTAATGGTAATCAAGGAGAAATTAAAATTGGAGATCTTGGTCTCGCTGCTATTCTCCGGAAATCGCATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCTTATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGAAAAAAACCAGATGCCTTATATAAAGTGAAGGATCCGAGCATGCGGCAATTTGTTGAGAAATGCTTGGCACCAGTCTCTTGTAGACCTTCAGCAAGGGAACTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGTAAGTTACAACTTTCAGGATGTCCGAGAGAACTCAACGGTATTGCTTTTACTACAGCACACCCTTTCCTTGAACGACAAGGAAGTTTCAGCTCGATTAATTACTGTTTGGAGGCCTCAGATGAATGGAGGTGTCGTTCGGTTCAGACTGAACCTGATGGGTTTGAACTTTTTGAGAATGATGATGATGACCAATTGGAAAACCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTCTTAGACTTAGGATTGCAGATAAAGAAGGACGGATTCGAAACATTTACTTCCCGTTTGACACCAAGAATGATACAGCATTAACGGTTGCTACTGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACCTGAGTGGAAGTCGGGGCCTGGAATAGATGAAACACCTCGTATCTCTTACGATGGTGGCTGTCAAAGCCACGACGCTGCTAACCATTCATGTGATCATAGTTTGATAGGGAATAACCAAAATGGAGAAAAACTCTATCAGATTTTAAACTTGAGCACAGTTGAACGTGCTTCGGTGCACGAACTTTTCAAGCAGGACTCCCTCAAAGCTGATCCGCCTCCAGAACCTGTGGTAGAGAGTCCACCAAAAGTGTCAAGCCAGCATTATCAGCCAAACTCAGTCCTCCTTGAAAATCCAGCTCTTGGTTCTCATAGTTTTAGGCATAGCCATTCTAATCAAAATTTCAAGAAAATAGGCCAGTCGATCATTGTTGGGGATGACAAAGAAAAAATACTAGATAAAAATGCCATTGCAAGAACTTCACTCAGAAGCTTGCTGGGTTCCCGATCGCTGTCAACAGTTCCGTCCTATCGTGAAGATAAATTTGCATCCCAAATTCATCGAGAAATTAGATGGCTATGGAATTGA 1842 40.55 METIDSITGFSNLLQPPDFSQYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKSLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNILVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPDALYKVKDPSMRQFVEKCLAPVSCRPSARELLSDPFLQIDDCESKLQLSGCPRELNGIAFTTAHPFLERQGSFSSINYCLEASDEWRCRSVQTEPDGFELFENDDDDQLENLDNSIKGKIREDGSIVLRLRIADKEGRIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKSGPGIDETPRISYDGGCQSHDAANHSCDHSLIGNNQNGEKLYQILNLSTVERASVHELFKQDSLKADPPPEPVVESPPKVSSQHYQPNSVLLENPALGSHSFRHSHSNQNFKKIGQSIIVGDDKEKILDKNAIARTSLRSLLGSRSLSTVPSYREDKFASQIHREIRWLWN 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5426778 5430726 - CmaCh11G010050.1 Cma11g01005 303514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01005 613 Gene3D Transferase(Phosphotransferase) domain 1 115 295 - -
Cma11g01005 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cma11g01005 613 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674|GO:0005524
Cma11g01005 613 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01005 613 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 613 - -
Cma11g01005 613 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01005 613 MobiDBLite consensus disorder prediction 504 526 - -
Cma11g01005 613 Gene3D - 376 444 - -
Cma11g01005 613 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Cma11g01005 613 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 613 - -
Cma11g01005 613 CDD STKc_WNK 30 289 - -
Cma11g01005 613 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Cma11g01005 613 SMART serkin_6 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01144 Cma-Chr8:7057164 Cma11g01005 Cma-Chr11:5426778 3.13E-75 dispersed
Cma11g01005 Cma-Chr11:5426778 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma11g01005 Cma-Chr11:5426778 Cma12g01107 Cma-Chr12:8766135 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68904 PF00069 Pkinase 1.30E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01005 K08867 - csv:101222641 986.482