Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01020 ATGACTGTTCCAATTGTGAATGCCATCAAGAATCGGTTTCCAATGAACTACAACACAAAGCCCTTGTCAATGCTAATCAGTACCACCTTGTTGGTCAGCAATATCATTGTTGCTCTTGCAATTCCATTTTTTGGCTCTCTGATGTCGCTAGTCGGAGCGTTTCTGAGTGTGACTGCTTCGATTATACTGCCGTGCGTGTGTTACTTGAAGATATCGGGGAATTACAAGAGGTTCGGATTGGAGACGGTGATAATAAGTGGAATCATATTGATAGGCGTTGTAGCTGCCATTGTTGGCACATATGTAGCTATTGTAGAAATTAATAGGTTGTACATTTGCGGATCGGGAAAGCATGTGGAATTGGATATGGGCGGTGGGTTTGGGATTGTTGGGAGTTTGGGGATGGAAGATCTTGAATTGGATGTGGGTCACGCCGAAGAGGCTGGAGAAGTGCTTGCGACAGCAAGGTCTCGCCGGCAACTCTTATCGCCTTCTGTTTGGGGATTCCAAGGACACTGCCGCTGCCGTCCGCCAAGCAAGGACGCAGCCCATCAGCTTCTCCCATCGGTATATATAACACAGCCTGAACAAGTGAAGATGGTTTTCTCTCAAATCAATGATATTCGGAAGGCAACTTCGTTTCCGTTTAGAAGAAGAATAGGCGGTGGAGTCGTTTCTCTTGAAGGAGCTAAATGGGCTAAGCACAGAAAGATCATCAACCCTGCGTTTCACATGGAAAAGCTTAAGGATATGTTTCCAGCATTCTCCAAGAGTTGTAGCGAGATGATTAACAAATGGGAAATGATGATCACTAAAGAAGGGTGCTGTGAATTAGATGTATGGCCTGATTTACAAAATATGGCTGCAGATGTCATTTCTCGAACCGCATTTGGTAGTAGTTATGAGGAAGGTAAGAAGATCTTCCAGCTCTTGAAACAGTTTCTTCCAACTAAGTTGAACAAGAGGATGGATGAGATTAATGGCAAAATACGAGACATGATTTGGGGTATTATAAGCAAAAGACAAAATGCTATGAAGAAAGGTGAAGCTTCCAATGATGATTTGTTGGGCATCCTCTTAGAATCAAATTCACGTGAGATTCAAGAACACAAAAACAAGAAAGATGTTGGAATGAGTATCGAAGAAGTAATTGCTGAATGCAGGCTTTTCTATTTTGCTGGTCAAGAAACCACAGCAGCTTTGCTTGCTTGGACGATGGTTCTACTTGGTCGATACTCCGAGTGGCAAGATCGAGCAAGAGCGGAAGTCCTTGAGGTCTTTGGTGATAATAAAAAACTTGATTTTGATGGTCTAAGTCGTCTTAAAGTTGTTACTATGATACTAAACGAGGTTCTTAGACTATATCCTCCCGTTGGTATGCTAGCTCGAGAGATTCACAAGGAAACTAAGTTAGGGAATCTGACATTACCCGTTGGAGTATCAATAGGCATTCCAATTGTATGCATCCATCAAGATCCTACAATATGGGGAGAAGATGCGAGTGAGTTCAAGCCCGAGAGATTTGCCGAGGGGATTTCCAAAGCAACAAAGAATCAAGTATGCTTCATTCCTTTTGGATGGGGTCCTCGAATCTGTCTCGGTCAAAATTTTGCGATGATTGAAGCAAAAATAGCATTATCAATGATTTTGCAGCGATTCTCGTTTGAACTTTCTCCAAGTTATACTCATGCTCCTATCTCGAACGTCACTATTCAGCCCCAACATGGGGCTCATCTCATCCTCCATATGTTGTAA 1755 42.74 MTVPIVNAIKNRFPMNYNTKPLSMLISTTLLVSNIIVALAIPFFGSLMSLVGAFLSVTASIILPCVCYLKISGNYKRFGLETVIISGIILIGVVAAIVGTYVAIVEINRLYICGSGKHVELDMGGGFGIVGSLGMEDLELDVGHAEEAGEVLATARSRRQLLSPSVWGFQGHCRCRPPSKDAAHQLLPSVYITQPEQVKMVFSQINDIRKATSFPFRRRIGGGVVSLEGAKWAKHRKIINPAFHMEKLKDMFPAFSKSCSEMINKWEMMITKEGCCELDVWPDLQNMAADVISRTAFGSSYEEGKKIFQLLKQFLPTKLNKRMDEINGKIRDMIWGIISKRQNAMKKGEASNDDLLGILLESNSREIQEHKNKKDVGMSIEEVIAECRLFYFAGQETTAALLAWTMVLLGRYSEWQDRARAEVLEVFGDNKKLDFDGLSRLKVVTMILNEVLRLYPPVGMLAREIHKETKLGNLTLPVGVSIGIPIVCIHQDPTIWGEDASEFKPERFAEGISKATKNQVCFIPFGWGPRICLGQNFAMIEAKIALSMILQRFSFELSPSYTHAPISNVTIQPQHGAHLILHML 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5532841 5541048 - CmaCh11G010200.1 Cma11g01020 303529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01020 584 Pfam Transmembrane amino acid transporter protein 17 104 IPR013057 -
Cma11g01020 584 Pfam Cytochrome P450 188 568 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS E-class P450 group I signature 402 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS E-class P450 group I signature 287 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS E-class P450 group I signature 532 555 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS E-class P450 group I signature 382 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS E-class P450 group I signature 522 532 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 SUPERFAMILY Cytochrome P450 187 581 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS P450 superfamily signature 532 543 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS P450 superfamily signature 393 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PRINTS P450 superfamily signature 523 532 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g01020 584 PANTHER CYTOCHROME P450 FAMILY MEMBER 186 575 - -
Cma11g01020 584 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 525 534 IPR017972 GO:0005506|GO:0016705
Cma11g01020 584 PANTHER CYTOCHROME P450 72A11-RELATED 186 575 - -
Cma11g01020 584 Gene3D Cytochrome P450 183 584 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01279 Cma-Chr1:9202397 Cma11g01020 Cma-Chr11:5532841 1.66E-146 dispersed
Cma06g00027 Cma-Chr6:163859 Cma11g01020 Cma-Chr11:5532841 1.73E-13 dispersed
Cma09g00687 Cma-Chr9:3244762 Cma11g01020 Cma-Chr11:5532841 1.10E-75 dispersed
Cma10g00756 Cma-Chr10:3444531 Cma11g01020 Cma-Chr11:5532841 3.35E-148 dispersed
Cma11g01020 Cma-Chr11:5532841 Cma18g01090 Cma-Chr18:8964506 1.48E-110 dispersed
Cma10g01055 Cma-Chr10:6520871 Cma11g01020 Cma-Chr11:5532841 1.48E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01020 - - cmos:111432119 764.992