Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01024 | ATGAGTTCTTCTCAGGATCCTCAGCTTGTTCAACAACAATCCGTTGTGGATGTTGAAGAATTTGTCTCCGTTGAAAACCCCGATTCCAAACGCTACCAGTTTGGATCGTTGTTCAAAAACCATTACCCTCCCAGCTTTTCTCGGAAGCTTGTGGCGGAGGTGATAGCGACGTATTTGTTAGTGTTTGTAACGTGTGGGGCGGCAGCATTGAATGGGAGCGATGCACAAAGAGTGTCGCAGCTTGGTGCCTCGGTCGCCGGTGGCCTTATTGTGACGGTGATGATTTACGCGGTCGGACACATTTCCGGCGCCCATATGAACCCGGCTGTCACCACGGCTTTTGCTGCAACACGACACTTTCCATGGAAACAGGTTCCATTGTATGCAGCAGCTCAATTGAGTGGGGCAACCTGTGCAGCCTTTACACTGCGCCTATTGTTACATCCCATCAAACACTTGGGCACTACAACGCCATCGGGATCAGATTTACAAGCACTCGTCATGGAGATTGTTGTTACCTTCTCAATGATGTTTGTCACATGCGCTGTTGCAACCGATACTAAAGCAGTGGGAGAGCTGGCAGGTTTGGCAGTTGGTTCTGCCGTGTGTATCACATCCATCTTGGCTGGACCTGTATCAGGTGGGTCGATGAACCCTGTGAGGACATTAGGACCTGCAATGGCAAGTGATAATTATAAAGGACTTTGGGTGTACTTTGTTGGGCCGGTTACAGGAACCCTATTAGGGGCATGGTCATATAAGTTCATACGTGCCAGTGATAAACCTGTGCATTTAATTTCTCCTCACTCATTTTCACTCAAACTTCGAAGAATGTCAAGATCTGACGTTGGTGAAGGTGAAAGATGA | 867 | 48.21 | MSSSQDPQLVQQQSVVDVEEFVSVENPDSKRYQFGSLFKNHYPPSFSRKLVAEVIATYLLVFVTCGAAALNGSDAQRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAAAQLSGATCAAFTLRLLLHPIKHLGTTTPSGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAGPVSGGSMNPVRTLGPAMASDNYKGLWVYFVGPVTGTLLGAWSYKFIRASDKPVHLISPHSFSLKLRRMSRSDVGEGER | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5571213 | 5575228 | + | CmaCh11G010240.1 | Cma11g01024 | 303533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01024 | 288 | SUPERFAMILY | Aquaporin-like | 42 | 266 | IPR023271 | - | |
Cma11g01024 | 288 | Gene3D | Glycerol uptake facilitator protein. | 8 | 263 | IPR023271 | - | |
Cma11g01024 | 288 | PANTHER | MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED | 17 | 272 | - | - | |
Cma11g01024 | 288 | PANTHER | AQUAPORIN NIP2-1 | 17 | 272 | IPR034294 | - | |
Cma11g01024 | 288 | CDD | MIP | 48 | 256 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 48 | 67 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 168 | 186 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 199 | 221 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | PRINTS | Major intrinsic protein family signature | 236 | 256 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01024 | 288 | Pfam | Major intrinsic protein | 45 | 253 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00971 | Cma-Chr2:5803306 | Cma11g01024 | Cma-Chr11:5571213 | 1.63E-71 | dispersed | |
Cma03g01348 | Cma-Chr3:8618130 | Cma11g01024 | Cma-Chr11:5571213 | 5.12E-75 | dispersed | |
Cma07g00157 | Cma-Chr7:798243 | Cma11g01024 | Cma-Chr11:5571213 | 4.67E-63 | dispersed | |
Cma11g01024 | Cma-Chr11:5571213 | Cma14g00591 | Cma-Chr14:2933065 | 1.03E-129 | dispersed | |
Cma11g01024 | Cma-Chr11:5571213 | Cma11g01025 | Cma-Chr11:5589421 | 5.69E-128 | tandem | |
Cma11g01024 | Cma-Chr11:5571213 | Cma14g00590 | Cma-Chr14:2925480 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01024 | K09874 | - | csv:101205692 | 499.204 |