Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01024 ATGAGTTCTTCTCAGGATCCTCAGCTTGTTCAACAACAATCCGTTGTGGATGTTGAAGAATTTGTCTCCGTTGAAAACCCCGATTCCAAACGCTACCAGTTTGGATCGTTGTTCAAAAACCATTACCCTCCCAGCTTTTCTCGGAAGCTTGTGGCGGAGGTGATAGCGACGTATTTGTTAGTGTTTGTAACGTGTGGGGCGGCAGCATTGAATGGGAGCGATGCACAAAGAGTGTCGCAGCTTGGTGCCTCGGTCGCCGGTGGCCTTATTGTGACGGTGATGATTTACGCGGTCGGACACATTTCCGGCGCCCATATGAACCCGGCTGTCACCACGGCTTTTGCTGCAACACGACACTTTCCATGGAAACAGGTTCCATTGTATGCAGCAGCTCAATTGAGTGGGGCAACCTGTGCAGCCTTTACACTGCGCCTATTGTTACATCCCATCAAACACTTGGGCACTACAACGCCATCGGGATCAGATTTACAAGCACTCGTCATGGAGATTGTTGTTACCTTCTCAATGATGTTTGTCACATGCGCTGTTGCAACCGATACTAAAGCAGTGGGAGAGCTGGCAGGTTTGGCAGTTGGTTCTGCCGTGTGTATCACATCCATCTTGGCTGGACCTGTATCAGGTGGGTCGATGAACCCTGTGAGGACATTAGGACCTGCAATGGCAAGTGATAATTATAAAGGACTTTGGGTGTACTTTGTTGGGCCGGTTACAGGAACCCTATTAGGGGCATGGTCATATAAGTTCATACGTGCCAGTGATAAACCTGTGCATTTAATTTCTCCTCACTCATTTTCACTCAAACTTCGAAGAATGTCAAGATCTGACGTTGGTGAAGGTGAAAGATGA 867 48.21 MSSSQDPQLVQQQSVVDVEEFVSVENPDSKRYQFGSLFKNHYPPSFSRKLVAEVIATYLLVFVTCGAAALNGSDAQRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAAAQLSGATCAAFTLRLLLHPIKHLGTTTPSGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAGPVSGGSMNPVRTLGPAMASDNYKGLWVYFVGPVTGTLLGAWSYKFIRASDKPVHLISPHSFSLKLRRMSRSDVGEGER 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5571213 5575228 + CmaCh11G010240.1 Cma11g01024 303533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01024 288 SUPERFAMILY Aquaporin-like 42 266 IPR023271 -
Cma11g01024 288 Gene3D Glycerol uptake facilitator protein. 8 263 IPR023271 -
Cma11g01024 288 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 272 - -
Cma11g01024 288 PANTHER AQUAPORIN NIP2-1 17 272 IPR034294 -
Cma11g01024 288 CDD MIP 48 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01024 288 Pfam Major intrinsic protein 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00971 Cma-Chr2:5803306 Cma11g01024 Cma-Chr11:5571213 1.63E-71 dispersed
Cma03g01348 Cma-Chr3:8618130 Cma11g01024 Cma-Chr11:5571213 5.12E-75 dispersed
Cma07g00157 Cma-Chr7:798243 Cma11g01024 Cma-Chr11:5571213 4.67E-63 dispersed
Cma11g01024 Cma-Chr11:5571213 Cma14g00591 Cma-Chr14:2933065 1.03E-129 dispersed
Cma11g01024 Cma-Chr11:5571213 Cma11g01025 Cma-Chr11:5589421 5.69E-128 tandem
Cma11g01024 Cma-Chr11:5571213 Cma14g00590 Cma-Chr14:2925480 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01024 K09874 - csv:101205692 499.204