Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01025 ATGGCCGCAGAGAACCCCGATTGGAGGTCCATCAATCAAGAAGCCTTCATCTCCTTGGGAATCGAACACCCTGATCCTCAACAATCCTTCTTCCGCCACCGATTTCACCAACTTTACCCAACCGAGTTCTACCAAAAGGTTGTGGCAGAGCTGATTGCAACGTATTTGCTTGTGTTTGTGACATGCGGGACGGCGGCATTGAGTGTCCATGATGAGCGGCAACTGCCCAAGCTTGGCGCGTCCATTGCGGGCGGCCTTATTGTCACGGTCATGATTTACGCTGTCGGACATATCTCTGGCGCTCATATGAATCCCGCGGTTACTTTTGCTTTTGCTTCTCTTAGGCGATTTCCTTGGAAACAGGTTCCACTCTATGTAGCTGCTCAACTAAGTGGTGCTACATCGGCAGCTTTTACCCTGCGCATATTATTGGACCCAATTAAAGAAATAGGCACTACTACACCTTCTGGTTCCGAGCCTAAAGCACTTCTCATGGAGATTGTTGTCTCATTCGATATGATGTTCGTCACTTTTGCAGTTGCCACCGACACAAAAGCAATAGGAGAGCTTGCAGGTATAGCAGTCGGTTCAGCTGTTTGTATCACATCTATCTTTGCAGGGCCTATATCGGGTGGATCGATGAACCCTGCGAGGACAATTGGACCAGCGATTGCAAGTTCACATTATGAAGGAATTTGGGTGTATTTGGTCGGGCCAGTTATAGGGACATTGTTGGGAGCATGGTCATATAATTTCATACGAGTGAGTGAAAAACATGGACATTAA 786 47.58 MAAENPDWRSINQEAFISLGIEHPDPQQSFFRHRFHQLYPTEFYQKVVAELIATYLLVFVTCGTAALSVHDERQLPKLGASIAGGLIVTVMIYAVGHISGAHMNPAVTFAFASLRRFPWKQVPLYVAAQLSGATSAAFTLRILLDPIKEIGTTTPSGSEPKALLMEIVVSFDMMFVTFAVATDTKAIGELAGIAVGSAVCITSIFAGPISGGSMNPARTIGPAIASSHYEGIWVYLVGPVIGTLLGAWSYNFIRVSEKHGH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5589421 5591742 + CmaCh11G010250.1 Cma11g01025 303534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01025 261 TIGRFAM MIP: MIP family channel proteins 49 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 Pfam Major intrinsic protein 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 CDD MIP 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01025 261 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cma11g01025 261 SUPERFAMILY Aquaporin-like 36 255 IPR023271 -
Cma11g01025 261 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 257 - -
Cma11g01025 261 PANTHER AQUAPORIN NIP2-1 17 257 IPR034294 -
Cma11g01025 261 Gene3D Glycerol uptake facilitator protein. 21 260 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01025 Cma-Chr11:5589421 Cma14g00591 Cma-Chr14:2933065 1.22E-157 dispersed
Cma15g01348 Cma-Chr15:8469875 Cma11g01025 Cma-Chr11:5589421 1.60E-58 dispersed
Cma11g01024 Cma-Chr11:5571213 Cma11g01025 Cma-Chr11:5589421 5.69E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01025 K09874 - csv:101205456 380.178