Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01025 | ATGGCCGCAGAGAACCCCGATTGGAGGTCCATCAATCAAGAAGCCTTCATCTCCTTGGGAATCGAACACCCTGATCCTCAACAATCCTTCTTCCGCCACCGATTTCACCAACTTTACCCAACCGAGTTCTACCAAAAGGTTGTGGCAGAGCTGATTGCAACGTATTTGCTTGTGTTTGTGACATGCGGGACGGCGGCATTGAGTGTCCATGATGAGCGGCAACTGCCCAAGCTTGGCGCGTCCATTGCGGGCGGCCTTATTGTCACGGTCATGATTTACGCTGTCGGACATATCTCTGGCGCTCATATGAATCCCGCGGTTACTTTTGCTTTTGCTTCTCTTAGGCGATTTCCTTGGAAACAGGTTCCACTCTATGTAGCTGCTCAACTAAGTGGTGCTACATCGGCAGCTTTTACCCTGCGCATATTATTGGACCCAATTAAAGAAATAGGCACTACTACACCTTCTGGTTCCGAGCCTAAAGCACTTCTCATGGAGATTGTTGTCTCATTCGATATGATGTTCGTCACTTTTGCAGTTGCCACCGACACAAAAGCAATAGGAGAGCTTGCAGGTATAGCAGTCGGTTCAGCTGTTTGTATCACATCTATCTTTGCAGGGCCTATATCGGGTGGATCGATGAACCCTGCGAGGACAATTGGACCAGCGATTGCAAGTTCACATTATGAAGGAATTTGGGTGTATTTGGTCGGGCCAGTTATAGGGACATTGTTGGGAGCATGGTCATATAATTTCATACGAGTGAGTGAAAAACATGGACATTAA | 786 | 47.58 | MAAENPDWRSINQEAFISLGIEHPDPQQSFFRHRFHQLYPTEFYQKVVAELIATYLLVFVTCGTAALSVHDERQLPKLGASIAGGLIVTVMIYAVGHISGAHMNPAVTFAFASLRRFPWKQVPLYVAAQLSGATSAAFTLRILLDPIKEIGTTTPSGSEPKALLMEIVVSFDMMFVTFAVATDTKAIGELAGIAVGSAVCITSIFAGPISGGSMNPARTIGPAIASSHYEGIWVYLVGPVIGTLLGAWSYNFIRVSEKHGH | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5589421 | 5591742 | + | CmaCh11G010250.1 | Cma11g01025 | 303534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01025 | 261 | TIGRFAM | MIP: MIP family channel proteins | 49 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | Pfam | Major intrinsic protein | 41 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | CDD | MIP | 45 | 253 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 45 | 64 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 84 | 108 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 121 | 140 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 165 | 183 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 196 | 218 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | PRINTS | Major intrinsic protein family signature | 233 | 253 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma11g01025 | 261 | ProSitePatterns | MIP family signature. | 102 | 110 | IPR022357 | - | |
Cma11g01025 | 261 | SUPERFAMILY | Aquaporin-like | 36 | 255 | IPR023271 | - | |
Cma11g01025 | 261 | PANTHER | MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED | 17 | 257 | - | - | |
Cma11g01025 | 261 | PANTHER | AQUAPORIN NIP2-1 | 17 | 257 | IPR034294 | - | |
Cma11g01025 | 261 | Gene3D | Glycerol uptake facilitator protein. | 21 | 260 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01025 | Cma-Chr11:5589421 | Cma14g00591 | Cma-Chr14:2933065 | 1.22E-157 | dispersed | |
Cma15g01348 | Cma-Chr15:8469875 | Cma11g01025 | Cma-Chr11:5589421 | 1.60E-58 | dispersed | |
Cma11g01024 | Cma-Chr11:5571213 | Cma11g01025 | Cma-Chr11:5589421 | 5.69E-128 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01025 | K09874 | - | csv:101205456 | 380.178 |