Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01027 ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATTCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACCCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCACCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCATGCTGCCAGTATGGGCGGCCATGCTCTGGACGGCTGCGGCGAGTTCATGCCTTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGACCCGGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCAGGCGGCAGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATTTGATCCAAGAATTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCACAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGAGCCAAACGCCGCCGCAAATGGGTCATCATCTTCCTCTTGA 885 54.12 MDLIPAISTAAAAITTGGGGAVKFPEFDAETPIKFQPTTKSHPFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRRDPEDTIATPTTTHVIEYQPHHRHHPPPPQAAAHRSPNSASPPPISSSYYPSAPHMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQEFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGEPNAAANGSSSSS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5597756 5598640 + CmaCh11G010270.1 Cma11g01027 303536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01027 294 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 21 270 - -
Cma11g01027 294 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Cma11g01027 294 MobiDBLite consensus disorder prediction 34 56 - -
Cma11g01027 294 MobiDBLite consensus disorder prediction 261 294 - -
Cma11g01027 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 270 - -
Cma11g01027 294 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
Cma11g01027 294 SUPERFAMILY Homeodomain-like 191 256 IPR009057 -
Cma11g01027 294 Pfam ZF-HD protein dimerisation region 63 116 IPR006456 -
Cma11g01027 294 MobiDBLite consensus disorder prediction 132 161 - -
Cma11g01027 294 Gene3D - 189 258 - -
Cma11g01027 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00562 Cma-Chr7:2432332 Cma11g01027 Cma-Chr11:5597756 8.98E-48 dispersed
Cma11g01027 Cma-Chr11:5597756 Cma18g01152 Cma-Chr18:9258379 1.74E-60 dispersed
Cma11g01027 Cma-Chr11:5597756 Cma14g00594 Cma-Chr14:2947003 8.90E-155 wgd
Cma11g01027 Cma-Chr11:5597756 Cma15g00271 Cma-Chr15:1286159 2.53E-84 wgd
Cma11g01027 Cma-Chr11:5597756 Cma04g02764 Cma-Chr4:18595504 1.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35860 PF04770 ZF-HD_dimer 4.00E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01027 - - csv:101204974 446.432