Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01027 | ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATTCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACCCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCACCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCATGCTGCCAGTATGGGCGGCCATGCTCTGGACGGCTGCGGCGAGTTCATGCCTTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGACCCGGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCAGGCGGCAGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATTTGATCCAAGAATTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCACAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGAGCCAAACGCCGCCGCAAATGGGTCATCATCTTCCTCTTGA | 885 | 54.12 | MDLIPAISTAAAAITTGGGGAVKFPEFDAETPIKFQPTTKSHPFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRRDPEDTIATPTTTHVIEYQPHHRHHPPPPQAAAHRSPNSASPPPISSSYYPSAPHMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQEFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGEPNAAANGSSSSS | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5597756 | 5598640 | + | CmaCh11G010270.1 | Cma11g01027 | 303536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01027 | 294 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 21 | 270 | - | - | |
Cma11g01027 | 294 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 64 | 115 | IPR006456 | - | |
Cma11g01027 | 294 | MobiDBLite | consensus disorder prediction | 34 | 56 | - | - | |
Cma11g01027 | 294 | MobiDBLite | consensus disorder prediction | 261 | 294 | - | - | |
Cma11g01027 | 294 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 21 | 270 | - | - | |
Cma11g01027 | 294 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 197 | 254 | IPR006455 | - | |
Cma11g01027 | 294 | SUPERFAMILY | Homeodomain-like | 191 | 256 | IPR009057 | - | |
Cma11g01027 | 294 | Pfam | ZF-HD protein dimerisation region | 63 | 116 | IPR006456 | - | |
Cma11g01027 | 294 | MobiDBLite | consensus disorder prediction | 132 | 161 | - | - | |
Cma11g01027 | 294 | Gene3D | - | 189 | 258 | - | - | |
Cma11g01027 | 294 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 64 | 115 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00562 | Cma-Chr7:2432332 | Cma11g01027 | Cma-Chr11:5597756 | 8.98E-48 | dispersed | |
Cma11g01027 | Cma-Chr11:5597756 | Cma18g01152 | Cma-Chr18:9258379 | 1.74E-60 | dispersed | |
Cma11g01027 | Cma-Chr11:5597756 | Cma14g00594 | Cma-Chr14:2947003 | 8.90E-155 | wgd | |
Cma11g01027 | Cma-Chr11:5597756 | Cma15g00271 | Cma-Chr15:1286159 | 2.53E-84 | wgd | |
Cma11g01027 | Cma-Chr11:5597756 | Cma04g02764 | Cma-Chr4:18595504 | 1.30E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35860 | PF04770 | ZF-HD_dimer | 4.00E-28 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01027 | - | - | csv:101204974 | 446.432 |