Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01039 ATGGAGGCGCCAGCTTTGATTCTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAATTCCGGCCACCAGACGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAAAAATAAGCAGCAATCCGATCAAGCTCCGACCACCACTACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCGTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACTATCACTAATTTTCCAATATCAGATTATGAGAAGGAGATTGAGATAATGCAGACGATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAAAGCAGTGGATTCTCTAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGAACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCAGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCACTGCCACCCGTCGCCACCCCGAACGAATCCCAAATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCTTCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTCTTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTCGTCGAGACCAACTCCAACCTTTCAGTGGATGAGGCTGTTAATGGAGAAGAGGCGAAGACTCGAGCTGTGCTTGACAATGTGTTCGATGAATTTGGAGACGTCTTCTGTGATAAACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCATTCTTAAATGGCTCATTTCATCGCTTCAAAGCACCCTGA 1167 45.76 MEAPALILKNEENLRICWTEGQIPATRRVKRRRRDPSTASAIDQTKNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISDYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESQMTSDPLKELCNSSSIFPAEETSLFQNHHYHDNSFHSLQKQELLHKSCSIPLNSYVKSSPSALDLLLRSSFFKKLVETNSNLSVDEAVNGEEAKTRAVLDNVFDEFGDVFCDKLTDETFVCSSDKELQESELHSFLNGSFHRFKAP 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5690035 5692290 - CmaCh11G010390.1 Cma11g01039 303548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01039 388 CDD AP2 63 129 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 CDD AP2 162 223 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 MobiDBLite consensus disorder prediction 27 65 - -
Cma11g01039 388 SUPERFAMILY DNA-binding domain 162 223 IPR016177 GO:0003677
Cma11g01039 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 373 - -
Cma11g01039 388 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 373 - -
Cma11g01039 388 SUPERFAMILY DNA-binding domain 63 129 IPR016177 GO:0003677
Cma11g01039 388 Gene3D AP2/ERF domain 63 129 IPR036955 GO:0003700|GO:0006355
Cma11g01039 388 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Cma11g01039 388 MobiDBLite consensus disorder prediction 40 63 - -
Cma11g01039 388 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 ProSiteProfiles AP2/ERF domain profile. 64 127 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 SMART rav1_2 64 133 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 Pfam AP2 domain 63 119 IPR001471 GO:0003700|GO:0006355
Cma11g01039 388 Pfam AP2 domain 162 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00446 Cma-Chr10:2030666 Cma11g01039 Cma-Chr11:5690035 2.96E-103 dispersed
Cma11g01039 Cma-Chr11:5690035 Cma18g00971 Cma-Chr18:8227470 2.48E-87 dispersed
Cma05g00927 Cma-Chr5:7492886 Cma11g01039 Cma-Chr11:5690035 1.49E-18 transposed
Cma11g01039 Cma-Chr11:5690035 Cma14g00603 Cma-Chr14:3000914 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35862 PF00847 AP2 6.00E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01039 - - csv:101210782 644.425