Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01039 | ATGGAGGCGCCAGCTTTGATTCTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAATTCCGGCCACCAGACGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAAAAATAAGCAGCAATCCGATCAAGCTCCGACCACCACTACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCGTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACTATCACTAATTTTCCAATATCAGATTATGAGAAGGAGATTGAGATAATGCAGACGATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAAAGCAGTGGATTCTCTAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGAACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCAGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCACTGCCACCCGTCGCCACCCCGAACGAATCCCAAATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCTTCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTCTTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTCGTCGAGACCAACTCCAACCTTTCAGTGGATGAGGCTGTTAATGGAGAAGAGGCGAAGACTCGAGCTGTGCTTGACAATGTGTTCGATGAATTTGGAGACGTCTTCTGTGATAAACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCATTCTTAAATGGCTCATTTCATCGCTTCAAAGCACCCTGA | 1167 | 45.76 | MEAPALILKNEENLRICWTEGQIPATRRVKRRRRDPSTASAIDQTKNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISDYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESQMTSDPLKELCNSSSIFPAEETSLFQNHHYHDNSFHSLQKQELLHKSCSIPLNSYVKSSPSALDLLLRSSFFKKLVETNSNLSVDEAVNGEEAKTRAVLDNVFDEFGDVFCDKLTDETFVCSSDKELQESELHSFLNGSFHRFKAP | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5690035 | 5692290 | - | CmaCh11G010390.1 | Cma11g01039 | 303548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01039 | 388 | CDD | AP2 | 63 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | CDD | AP2 | 162 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | MobiDBLite | consensus disorder prediction | 27 | 65 | - | - | |
Cma11g01039 | 388 | SUPERFAMILY | DNA-binding domain | 162 | 223 | IPR016177 | GO:0003677 | |
Cma11g01039 | 388 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 12 | 373 | - | - | |
Cma11g01039 | 388 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 12 | 373 | - | - | |
Cma11g01039 | 388 | SUPERFAMILY | DNA-binding domain | 63 | 129 | IPR016177 | GO:0003677 | |
Cma11g01039 | 388 | Gene3D | AP2/ERF domain | 63 | 129 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | Gene3D | AP2/ERF domain | 162 | 222 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | MobiDBLite | consensus disorder prediction | 40 | 63 | - | - | |
Cma11g01039 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 163 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | PRINTS | Ethylene responsive element binding protein signature | 203 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | SMART | rav1_2 | 163 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | SMART | rav1_2 | 64 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | Pfam | AP2 domain | 63 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g01039 | 388 | Pfam | AP2 domain | 162 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00446 | Cma-Chr10:2030666 | Cma11g01039 | Cma-Chr11:5690035 | 2.96E-103 | dispersed | |
Cma11g01039 | Cma-Chr11:5690035 | Cma18g00971 | Cma-Chr18:8227470 | 2.48E-87 | dispersed | |
Cma05g00927 | Cma-Chr5:7492886 | Cma11g01039 | Cma-Chr11:5690035 | 1.49E-18 | transposed | |
Cma11g01039 | Cma-Chr11:5690035 | Cma14g00603 | Cma-Chr14:3000914 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35862 | PF00847 | AP2 | 6.00E-09 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01039 | - | - | csv:101210782 | 644.425 |