Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01041 | ATGATGGCTGGCTGTCGGTTTAAGGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTAATGCCAACTCTACGAGCTGGCATCGCTGAATATGATGACTTTTTGCTCAACAAGGCTGTTGTAGCCCAACAAGTGGCTCAGGAGGCCTACAACCCTGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACAAGAAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCAATCGATCGATGTTGGAGATGCAATCGAAAATGGGCCAAAAACCGCAAGAAGCTAGCCTCTTGTGTACTTGGTTTTGGCCGAAAAACCACAGGTGGCAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACTGAATTTGTAGACCCTAAACCCGGAACCCTAAGACACGCATGCATTCAAAAACGACCGTTATGGATCATATTTGGACGTAGCATGATCATCAAGCTATCAAAGGAGCTATTGATATCAAGTCACAAGACCATCGATGCACGTGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGCAATGTAATCATCCACGGCCTACACATCCACCACATCGTGGAAGCCAATGGTGGCATGATCCGTGACGCATACAACCATGTGGGCCTGCGAACCGTCAGCGATGGCGATGGCATATCAATCTTTGGGTCATCCAACATTTGGCTCGACCATCTCTCCATGTCAAACTGCCAAGATGGGCTTATAGACGCAATCCAAGGCTCCACGGCTATCACAGTGTCAAACTCCCATTTCACGCATCATAACGATGTGATGCTTTTCGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTGACCGTGGCGTTTAACCATTTTGGGAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACGATTATAAGCCAAGGGAATCGGTTCATAGCGCCGCCAAACCCGGCTGCTAGGCAGATAACCAACAGGAACTATGCGCCAGAGAGTGTGTGGAAGACGTGGACGTGGAGGTCGGAAGGGGACTTGTTGATGAATGGAGCTTATTTTATTCAGTCGGGGAGTTCGAGTAAGCGAAGGCCGTACAGCAGGTTGGATATGATAAAGGCTAAGCCTGGGACGTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCGCATGCTAA | 1320 | 48.48 | MMAGCRFKVLMVLLLSMAVLMPTLRAGIAEYDDFLLNKAVVAQQVAQEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNRKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVDPKPGTLRHACIQKRPLWIIFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVEANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFIQSGSSSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRAC | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5702559 | 5704630 | - | CmaCh11G010410.1 | Cma11g01041 | 303550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 112 | 129 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 136 | 161 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 172 | 188 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 380 | 404 | IPR018082 | - | |
Cma11g01041 | 439 | PRINTS | Pollen allergen Amb family signature | 410 | 433 | IPR018082 | - | |
Cma11g01041 | 439 | Pfam | Pectate lyase, N terminus | 28 | 79 | IPR007524 | GO:0030570 | |
Cma11g01041 | 439 | Pfam | Pectate lyase | 175 | 355 | IPR002022 | - | |
Cma11g01041 | 439 | SMART | amb_all | 164 | 361 | IPR002022 | - | |
Cma11g01041 | 439 | PANTHER | PECTATE LYASE | 8 | 439 | - | - | |
Cma11g01041 | 439 | SUPERFAMILY | Pectin lyase-like | 90 | 429 | IPR011050 | - | |
Cma11g01041 | 439 | PANTHER | PECTATE LYASE 18-RELATED | 8 | 439 | IPR045032 | GO:0030570 | |
Cma11g01041 | 439 | Gene3D | - | 89 | 432 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00942 | Cma-Chr5:7598769 | Cma11g01041 | Cma-Chr11:5702559 | 0 | dispersed | |
Cma11g01041 | Cma-Chr11:5702559 | Cma18g00126 | Cma-Chr18:615357 | 0 | dispersed | |
Cma11g01041 | Cma-Chr11:5702559 | Cma14g00604 | Cma-Chr14:3003631 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01041 | K01728 | - | csv:101202789 | 746.888 |