Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01041 ATGATGGCTGGCTGTCGGTTTAAGGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTAATGCCAACTCTACGAGCTGGCATCGCTGAATATGATGACTTTTTGCTCAACAAGGCTGTTGTAGCCCAACAAGTGGCTCAGGAGGCCTACAACCCTGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACAAGAAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCAATCGATCGATGTTGGAGATGCAATCGAAAATGGGCCAAAAACCGCAAGAAGCTAGCCTCTTGTGTACTTGGTTTTGGCCGAAAAACCACAGGTGGCAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACTGAATTTGTAGACCCTAAACCCGGAACCCTAAGACACGCATGCATTCAAAAACGACCGTTATGGATCATATTTGGACGTAGCATGATCATCAAGCTATCAAAGGAGCTATTGATATCAAGTCACAAGACCATCGATGCACGTGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGCAATGTAATCATCCACGGCCTACACATCCACCACATCGTGGAAGCCAATGGTGGCATGATCCGTGACGCATACAACCATGTGGGCCTGCGAACCGTCAGCGATGGCGATGGCATATCAATCTTTGGGTCATCCAACATTTGGCTCGACCATCTCTCCATGTCAAACTGCCAAGATGGGCTTATAGACGCAATCCAAGGCTCCACGGCTATCACAGTGTCAAACTCCCATTTCACGCATCATAACGATGTGATGCTTTTCGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTGACCGTGGCGTTTAACCATTTTGGGAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACGATTATAAGCCAAGGGAATCGGTTCATAGCGCCGCCAAACCCGGCTGCTAGGCAGATAACCAACAGGAACTATGCGCCAGAGAGTGTGTGGAAGACGTGGACGTGGAGGTCGGAAGGGGACTTGTTGATGAATGGAGCTTATTTTATTCAGTCGGGGAGTTCGAGTAAGCGAAGGCCGTACAGCAGGTTGGATATGATAAAGGCTAAGCCTGGGACGTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCGCATGCTAA 1320 48.48 MMAGCRFKVLMVLLLSMAVLMPTLRAGIAEYDDFLLNKAVVAQQVAQEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNRKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVDPKPGTLRHACIQKRPLWIIFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVEANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFIQSGSSSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRAC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5702559 5704630 - CmaCh11G010410.1 Cma11g01041 303550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Cma11g01041 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Cma11g01041 439 Pfam Pectate lyase, N terminus 28 79 IPR007524 GO:0030570
Cma11g01041 439 Pfam Pectate lyase 175 355 IPR002022 -
Cma11g01041 439 SMART amb_all 164 361 IPR002022 -
Cma11g01041 439 PANTHER PECTATE LYASE 8 439 - -
Cma11g01041 439 SUPERFAMILY Pectin lyase-like 90 429 IPR011050 -
Cma11g01041 439 PANTHER PECTATE LYASE 18-RELATED 8 439 IPR045032 GO:0030570
Cma11g01041 439 Gene3D - 89 432 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00942 Cma-Chr5:7598769 Cma11g01041 Cma-Chr11:5702559 0 dispersed
Cma11g01041 Cma-Chr11:5702559 Cma18g00126 Cma-Chr18:615357 0 dispersed
Cma11g01041 Cma-Chr11:5702559 Cma14g00604 Cma-Chr14:3003631 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01041 K01728 - csv:101202789 746.888